View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17430_low_1 (Length: 323)
Name: NF17430_low_1
Description: NF17430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17430_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 7e-83; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 114 - 313
Target Start/End: Original strand, 37215903 - 37216100
Alignment:
| Q |
114 |
taaccaaataaaaatgcaagaatatacaaacctcttgaacagttttagaccatttggagttccacatctgaaactgaggcagatctctgatttcatggtt |
213 |
Q |
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| T |
37215903 |
taaccaaataaaaatgcaagaatatacaaacctcttgagcagttttagaccatttggagttccacatctgaaaccaaggcagatct--gatttcatggtt |
37216000 |
T |
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| Q |
214 |
gcagtcatagtaggagtttcacccctgaaatcgataaatgcaactcatgtaaatataacataattaaaattgnnnnnnngtgtgcatataatcccctatg |
313 |
Q |
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| T |
37216001 |
gcagtcatagtaggagtttcacccctgaaatcgataaatgcaactcatgtaaatataacataattaaaattgtttttttgtgtgcatataatcccctatg |
37216100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 37215072 - 37215122
Alignment:
| Q |
52 |
gcatgtgaacaccaaatgatattgaatctacacttacatgttaattaatga |
102 |
Q |
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| T |
37215072 |
gcatgtgaacaccaaatgatattgaatctacacttacatgttaattaatga |
37215122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 37215482 - 37215529
Alignment:
| Q |
52 |
gcatgtgaacaccaaatgatattgaatctacacttacatgttaattaatg |
101 |
Q |
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| T |
37215482 |
gcatgtgagaaccaaatgatattgaatct--acttacatgttaattaatg |
37215529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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