View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17430_low_2 (Length: 304)

Name: NF17430_low_2
Description: NF17430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17430_low_2
NF17430_low_2
[»] chr2 (1 HSPs)
chr2 (1-294)||(37735931-37736212)


Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 37736212 - 37735931
Alignment:
Q  1 ttctattatttagaaccacaagttcaataatgtgtctaaccactagtgatggaattttttgacacgtttctatcctttcttggttaaaaacaagtgccat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37736212 ttctattatttagaaccacaagttcaataatgtgtctaaccactagtgatggaattttttgacacgtttctatcttttcttggttaaaaacaagtgccat 37736113  T
Q  101 tgaccccagatgcaccgtgcttcaagcaaccaaacaaccaatttcttatcatacttttgtcactccaaattttatgttgaagtcttcatgtacaatttta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  37736112 tgaccccagatgcaccgtgcttcaagcaaccaaacaaccaatttcttatcatacttttgtcactccaaattgtatgctgaagtcttcatgtacaatttta 37736013  T
Q  201 tcgataaatagtaaccaatgctaggctatgaagaaagttattcagcttaaatagttgattcctttctggtttaagttaaggacatattcttgga 294  Q
    ||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||| |||||    
T  37736012 tcgataaatagtaaccaatgctaggctatgaagaaagttatt------------ttgattcctttctggtttaagttaaggacatattattgga 37735931  T

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