View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17430_low_3 (Length: 277)

Name: NF17430_low_3
Description: NF17430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17430_low_3
NF17430_low_3
[»] chr2 (2 HSPs)
chr2 (20-263)||(22996277-22996519)
chr2 (61-117)||(17564612-17564668)
[»] chr3 (5 HSPs)
chr3 (34-203)||(11514459-11514626)
chr3 (33-203)||(15552626-15552796)
chr3 (33-188)||(21317940-21318094)
chr3 (82-203)||(15648307-15648422)
chr3 (124-188)||(16793735-16793798)
[»] chr6 (2 HSPs)
chr6 (79-188)||(31126740-31126849)
chr6 (111-196)||(20462561-20462646)
[»] chr7 (3 HSPs)
chr7 (34-188)||(18360966-18361119)
chr7 (34-187)||(11571627-11571779)
chr7 (42-107)||(9763416-9763481)
[»] scaffold0040 (1 HSPs)
scaffold0040 (79-203)||(3351-3474)
[»] chr8 (1 HSPs)
chr8 (79-188)||(23191970-23192079)
[»] chr1 (2 HSPs)
chr1 (79-188)||(18516523-18516632)
chr1 (124-166)||(20109296-20109338)
[»] chr4 (4 HSPs)
chr4 (41-166)||(14356547-14356668)
chr4 (42-166)||(10327710-10327834)
chr4 (79-119)||(13892502-13892542)
chr4 (79-164)||(18776673-18776756)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 22996277 - 22996519
Alignment:
Q  20 actcttttctttaattttagtctttttcttggtgacaaaggggggagtaagacatattaacatttaggctctgagtccactaaattaagattaaaattaa 119  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22996277 actcttttctttaattttagtctttttcttggtgacaaaagggggagtaagacatattaacatttaggctctgagtccactaaattaagattaaaattaa 22996376  T
Q  120 ttttggagaaccttcttctcatctcttagtctttggatttcatgtgaattatttctaagtgacgtttttgtacttaaaatgaataagttatttggattta 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||    
T  22996377 ttttggagaaccttcttctcatctcttagtctttggatttcatgtgaattatttctgagtgacgtttttgtactt-agatgaataagttatttggattta 22996475  T
Q  220 ttcattattaataacttacatcaatagatagctctatttcattt 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  22996476 ttcattattaataacttacatcaatagatagctctatttcattt 22996519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 17564612 - 17564668
Alignment:
Q  61 ggggagtaagacatattaacatttaggctctgagtccactaaattaagattaaaatt 117  Q
    |||||||||||||||| | |||||||||||| |||||||||| |||| | |||||||    
T  17564612 ggggagtaagacatataagcatttaggctctcagtccactaagttaaaaataaaatt 17564668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 203
Target Start/End: Complemental strand, 11514626 - 11514459
Alignment:
Q  34 ttttagtctttttcttggtgacaaaggggggagtaagaca--tattaacatttaggctctgagtccactaaattaagattaaaattaattttggagaacc 131  Q
    ||||||||||||| ||| ||| |||  ||||||||||| |  || || |||||||||||| |||||||||||||||    ||||| ||||| ||||||||    
T  11514626 ttttagtctttttgttgatgaaaaaaaggggagtaagatacgtaatatcatttaggctctaagtccactaaattaa----aaaatcaatttaggagaacc 11514531  T
Q  132 ttcttctcatctcttagtctttggatttcatgtgaattatttctaagtgacgtttttgtacttaaaatgaat 203  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||    
T  11514530 ttcttctcatctcttagtctttggatttcatgtgaattaattctaagtgacgtttttatgcttaaaatgaat 11514459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 33 - 203
Target Start/End: Complemental strand, 15552796 - 15552626
Alignment:
Q  33 attttagtctttttcttggtgacaaaggggggagtaagacatatta--acatttaggctctgagtccactaaattaagattaaaattaattttggagaac 130  Q
    |||||||||||||| ||| |||||||  ||||||||||| |||| |  |||||||||||||||||||||||||||||   |||||||||||||  |||||    
T  15552796 attttagtctttttgttgatgacaaaacggggagtaagatatataatgacatttaggctctgagtccactaaattaaa--taaaattaattttcaagaac 15552699  T
Q  131 cttcttctcatctcttagtctttggatttcatgtgaattatttctaagtgacgtttttgtacttaaaatgaat 203  Q
    ||| ||||||||| ||||||||| | || |||||||||||||||| |||||||||||||| || |||||||||    
T  15552698 cttattctcatcttttagtctttcgtttacatgtgaattatttctgagtgacgtttttgtgctaaaaatgaat 15552626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 33 - 188
Target Start/End: Complemental strand, 21318094 - 21317940
Alignment:
Q  33 attttagtctttttcttggtgacaaaggggggagtaagacatattaacatttaggctctgagtccactaaattaagattaaaattaattttggagaacct 132  Q
    |||||| ||||||| ||| ||| ||| ||||||||| || ||| || ||||||| || |||| |||||||||| | |||||||||||||| |||||||||    
T  21318094 attttattctttttgttgatgataaaagggggagtaggatatagta-catttagactatgagcccactaaatttacattaaaattaatttaggagaacct 21317996  T
Q  133 tcttctcatctcttagtctttggatttcatgtg-aattatttctaagtgacgttttt 188  Q
     |||||||||||||||||| ||| ||||||||| |||||||| | |||||| |||||    
T  21317995 ccttctcatctcttagtctctgg-tttcatgtgaaattatttttgagtgacattttt 21317940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 15648422 - 15648307
Alignment:
Q  82 tttaggctctgagtccactaaattaagattaaaattaattttggagaaccttcttctcatctcttagtctttggatttcatgtgaattatttctaagtga 181  Q
    |||||||||||||||||||||| |||      ||||||||||  |||||||| ||||||||| ||||||||| |||| |||||||||||||||| |||||    
T  15648422 tttaggctctgagtccactaaaataa------aattaattttcaagaaccttattctcatcttttagtctttcgattacatgtgaattatttctgagtga 15648329  T
Q  182 cgtttttgtacttaaaatgaat 203  Q
     |||||||| || |||||||||    
T  15648328 tgtttttgtgctaaaaatgaat 15648307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 16793735 - 16793798
Alignment:
Q  124 ggagaaccttcttctcatctcttagtctttggatttcatgtgaattatttctaagtgacgttttt 188  Q
    |||||| || |||||||||||||||||||| ||||||||||||  | ||||| ||||||||||||    
T  16793735 ggagaatctgcttctcatctcttagtcttt-gatttcatgtgagatttttctgagtgacgttttt 16793798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 31126740 - 31126849
Alignment:
Q  79 acatttaggctctgagtccactaaattaagattaaaattaattttggagaaccttcttctcatctcttagtctttggatttcatgtgaattatttctaag 178  Q
    ||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||    
T  31126740 acatttagattctgagtccactaaattaagattaaaattaatttaggagaaccttcttctcatctcttagtctctggatttgatgtgaattatttctgag 31126839  T
Q  179 tgacgttttt 188  Q
     |||||||||    
T  31126840 ggacgttttt 31126849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 20462646 - 20462561
Alignment:
Q  111 taaaattaattttggagaaccttcttctcatctcttagtctttggatttcatgtgaattatttctaagtgacgtttttgtacttaa 196  Q
    |||||||||||| ||||||  ||||||  |||||||||||||||||||||||| |||||| || | |||||||||||||| |||||    
T  20462646 taaaattaatttaggagaattttcttcctatctcttagtctttggatttcatgcgaattaattttgagtgacgtttttgtgcttaa 20462561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 188
Target Start/End: Original strand, 18360966 - 18361119
Alignment:
Q  34 ttttagtctttttcttggtgacaaaggggggagtaagacatattaacatttaggctctgagtccactaaattaagattaaaattaattttgg-agaacct 132  Q
    ||||||||||||| ||| ||||||| |||| ||||||| ||| || |||||||||||| ||||||||||||||| ||||||| |||||| || ||||| |    
T  18360966 ttttagtctttttgttgatgacaaaagggg-agtaagatatagta-catttaggctctaagtccactaaattaaaattaaaactaatttagggagaactt 18361063  T
Q  133 tcttctcatctcttagtctttggatttcatgtgaattatttctaagtgacgttttt 188  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||    
T  18361064 tcttctcatctcttagtctctggatttcatgtgaagtatttctgagtgacgttttt 18361119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 187
Target Start/End: Original strand, 11571627 - 11571779
Alignment:
Q  34 ttttagtctttttcttggtgacaaaggggggagtaagacatat--taacatttaggctctgagtccactaaattaagattaaaattaattttggagaacc 131  Q
    ||||||||||||| ||| ||||||| |||| ||||||| |  |  |||||||||||||| ||||||||||||||||   |||||||| ||| |||||| |    
T  11571627 ttttagtctttttgttgatgacaaaagggg-agtaagatacgtgataacatttaggctccgagtccactaaattaaa--taaaattagtttaggagaatc 11571723  T
Q  132 ttcttctcatctcttagtctttggatttcatgtgaattatttctaagtgacgtttt 187  Q
    |||||||||||||||||||| |||||||||||||||||| |||| | |||||||||    
T  11571724 ttcttctcatctcttagtctctggatttcatgtgaattaattctgaatgacgtttt 11571779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 9763481 - 9763416
Alignment:
Q  42 tttttcttggtgacaaaggggggagtaagacatattaacatttaggctctgagtccactaaattaa 107  Q
    ||||| ||| ||||||| || ||||||||||||| || |||  |||||||||||||||||| ||||    
T  9763481 tttttgttgatgacaaaaggaggagtaagacataatagcatccaggctctgagtccactaagttaa 9763416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 203
Target Start/End: Original strand, 3351 - 3474
Alignment:
Q  79 acatttaggctctgagtccactaaattaagattaaaattaattttggagaaccttcttctcatctcttagtctttggatttcatgtg-aattatttctaa 177  Q
    ||||||||||  |||| |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||| |  |||||||||| |||||||| | |    
T  3351 acatttaggcattgagcccactaaattaacattaaaattaatttaggagaacctgcttctcatctcttagtctct-aatttcatgtgaaattatttttga 3449  T
Q  178 gtgacgtttttgtacttaaaatgaat 203  Q
    |||||||||||| | |||||||||||    
T  3450 gtgacgtttttgga-ttaaaatgaat 3474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 23191970 - 23192079
Alignment:
Q  79 acatttaggctctgagtccactaaattaagattaaaattaattttggagaaccttcttctcatctcttagtctttggatttcatgtgaattatttctaag 178  Q
    |||||||||||||||  ||||||||||||  ||||||||||||| ||||||| |||||||||||||||||||| || |||||||||  | ||||||| ||    
T  23191970 acatttaggctctgaacccactaaattaaagttaaaattaatttaggagaacattcttctcatctcttagtctctgaatttcatgtatactatttctgag 23192069  T
Q  179 tgacgttttt 188  Q
    |||| |||||    
T  23192070 tgacattttt 23192079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 18516523 - 18516632
Alignment:
Q  79 acatttaggctctgagtccactaaattaagattaaaattaattttggagaaccttcttctcatctcttagtctttggatttcatgtga-attatttctaa 177  Q
    |||||||||||||||| | |||||||||  |||||||||||||| |||||||||  ||||||||||||||||||| ||||| |||||| ||||||| | |    
T  18516523 acatttaggctctgagccaactaaattagaattaaaattaatttaggagaacctggttctcatctcttagtcttt-gatttgatgtgagattatttatga 18516621  T
Q  178 gtgacgttttt 188  Q
    |||||||||||    
T  18516622 gtgacgttttt 18516632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 20109296 - 20109338
Alignment:
Q  124 ggagaaccttcttctcatctcttagtctttggatttcatgtga 166  Q
    ||||||||| |||||||||||||||||||| ||| ||||||||    
T  20109296 ggagaacctccttctcatctcttagtcttttgatatcatgtga 20109338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 166
Target Start/End: Original strand, 14356547 - 14356668
Alignment:
Q  41 ctttttcttggtgacaaaggggggagtaagacatattaacatttaggctctgagtccactaaattaagattaaaattaattttggagaaccttcttctca 140  Q
    |||||| ||| |||||||  |||||||| |||||| || |||||||| |||||||||||||||||||  ||||||||||||| |||||||||  ||||||    
T  14356547 ctttttgttgatgacaaaatggggagta-gacatagta-catttaggttctgagtccactaaattaac-ttaaaattaatttaggagaacctgtttctca 14356643  T
Q  141 tctcttagtctttggatttcatgtga 166  Q
    |||| |||||||| ||||||||||||    
T  14356644 tctcctagtcttt-gatttcatgtga 14356668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 166
Target Start/End: Original strand, 10327710 - 10327834
Alignment:
Q  42 tttttcttggtgacaaaggggggagtaagacatattaa--catttaggctctgagtccactaaattaagattaaaattaattttggagaaccttcttctc 139  Q
    ||||| ||| ||||||| ||||||||||||||||| |   |||||||||||||||||| |||| ||||   |||||||||||| ||| ||||||||||||    
T  10327710 tttttgttgatgacaaaagggggagtaagacatataatggcatttaggctctgagtccgctaagttaaa--taaaattaatttaggaaaaccttcttctc 10327807  T
Q  140 atctcttagtctttggatttcatgtga 166  Q
    ||||||||| || ||||| | ||||||    
T  10327808 atctcttagcctctggatataatgtga 10327834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 13892542 - 13892502
Alignment:
Q  79 acatttaggctctgagtccactaaattaagattaaaattaa 119  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  13892542 acatttaggccctgagtccactaaattaaaattaaaattaa 13892502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 18776756 - 18776673
Alignment:
Q  79 acatttaggctctgagtccactaaattaagattaaaattaattttggagaaccttcttctcatctcttagtctttggatttcatgt 164  Q
    ||||||||| | | || ||||||||||||  ||||||||||||| ||||||| |  |||| |||||||||||||| ||||||||||    
T  18776756 acatttaggttgtaagcccactaaattaac-ttaaaattaatttaggagaacgtgtttcttatctcttagtcttt-gatttcatgt 18776673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University