View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17430_low_4 (Length: 245)
Name: NF17430_low_4
Description: NF17430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17430_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 888414 - 888627
Alignment:
| Q |
18 |
gtagtgatatacatattactgcatcgtgttacgactcgcatatatcgtgagatagcgatgaccatagttataactactaaatgactaagaacacatatat |
117 |
Q |
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| T |
888414 |
gtagtgatatacatattactgcatcgtgttacgactcgcatatatcgtgagatagcgatgaccatagttataactactaaatgactaagaacacatatat |
888513 |
T |
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| Q |
118 |
gatagcattgtagaacctgatttttgcttaaatgacaaaaacagaatttcattaataaaataaaaagcaaatattgtcatctttattgaaatcctcaaaa |
217 |
Q |
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| T |
888514 |
gatagcattgtagaacctgatttttgcttaaatgacaaaaacagaatttcattaataaaataacaagcaaatattgtcatctttattgaaatcctcaaaa |
888613 |
T |
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| Q |
218 |
cataactttctgtg |
231 |
Q |
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|||||||||||||| |
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| T |
888614 |
cataactttctgtg |
888627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 45 - 223
Target Start/End: Complemental strand, 1002938 - 1002762
Alignment:
| Q |
45 |
gttacgactcgcatatatcgtgagatagcgatgaccatagttataactactaaatgactaagaacacata-tatgatagcattgtagaacctgatttttg |
143 |
Q |
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|||||||||| |||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||| |
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| T |
1002938 |
gttacgactcacatatatcgtgacagagcgacgaccatagttataactactaaatgactaagaacacataatacgatagcattgtagaacctgttttttg |
1002839 |
T |
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| Q |
144 |
cttaaatgacaaaaacagaatttcattaataaaataaaaagcaaatattgtcatctttattgaaatcctcaaaacataac |
223 |
Q |
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| T |
1002838 |
cttaaatggcaaaaacagaatttcattaataaaatagcatgcaaatatttcca---ttattgaaatcctcagaacataac |
1002762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 7553384 - 7553339
Alignment:
| Q |
132 |
acctgatttttgcttaaatgacaaaaacagaatttcattaataaaa |
177 |
Q |
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||||| |||||||||||||||||||||| ||||| ||||||||||| |
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| T |
7553384 |
acctggtttttgcttaaatgacaaaaaccgaattgcattaataaaa |
7553339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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