View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17431_low_1 (Length: 752)
Name: NF17431_low_1
Description: NF17431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17431_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 571; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 15 - 739
Target Start/End: Original strand, 7376365 - 7377093
Alignment:
| Q |
15 |
agaaaatactcacttttaaatcaaaaacttacgttcacatggaacacaaatgataacggactacttccaaaagtaaataggttccatcatgatgaacgat |
114 |
Q |
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| T |
7376365 |
agaaaatactcacttttaaaccaaaaacttacgttcacatggaacacaaatgataacgggctacttccaaaagtaaataggttccatcatgatgaacgat |
7376464 |
T |
|
| Q |
115 |
agattgaaaagggtgtggaaactaactcatgacactatcagaaaacctgtgattagccacggtcggctattagccacggtaaaataaccgtggctaatca |
214 |
Q |
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| T |
7376465 |
agattgaaaagggtgtggaaactcactcatgacacgatcagaaaattggtgattagccacagtcggctattagccacggtaaaataaccgtggctaatca |
7376564 |
T |
|
| Q |
215 |
ccggttttctggttgtgtgattttgaaatcatggataatgataatgatttttatatggttaagtttgatcaagacttttgacaaagaaaatgtcatattt |
314 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||| |
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| T |
7376565 |
tcggttttttgattgtgtgattttgaaatcatggataatgataatgatttttatatcgttaagtttgatcaagac-tctgacaaagaaaatgtcatattt |
7376663 |
T |
|
| Q |
315 |
gatgaaccatggatgatatatgatcagtgcccttgaactggttttcaatttacattatttatacatatgaatataagataaacgggcactaagctatgcc |
414 |
Q |
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||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
7376664 |
gataaaccatggatgatatatggtcagtgcccttgaactggttttcaatttagattatttatacatatgaatataaggcaaacgggcactgagctatgcc |
7376763 |
T |
|
| Q |
415 |
gctagaactttttggatggaaaataacaatatttaagaatataaaaataaaacttttataaaatttcatgtatctttacttctacatagtttatatttat |
514 |
Q |
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| T |
7376764 |
gctagaactttttggatggaaaatgacaatatttaagaatataaaaataaaactttaataaaatttcatgtatcttttcttctacatagtttatatttat |
7376863 |
T |
|
| Q |
515 |
gttcccctagnnnnnnnnnnnnnatttatagcccatgccaataatccttctggatggatttcctggtacccttttgtctggatggttttattttgaaggc |
614 |
Q |
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| T |
7376864 |
gttcccctagttttttgttttttatttatagcccatgccaataatccttctggatggatttcctggtacccttttgtctggatggttttattttgaaggc |
7376963 |
T |
|
| Q |
615 |
cgatggttgttgtcatgacgattcgaatagactttggtcgtctggttagaaaaggggatggtagttggatc-----atcagtactaatggtcactgaagg |
709 |
Q |
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| T |
7376964 |
cgatggttgttgtcatgacgattcgaatagattttggtcgtctggttagaaaaggggatggtagttggatcatcagatcagtactaatggtcactgaagg |
7377063 |
T |
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| Q |
710 |
tttacaacatcatacacacatgaggtttct |
739 |
Q |
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| T |
7377064 |
tttacaacatcatacacacatgaggtttct |
7377093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 39009377 - 39009430
Alignment:
| Q |
235 |
ttttgaaatcatggataatgataatgatttttatatggttaagtttgatcaaga |
288 |
Q |
| |
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||||||||||||||||||||| |||| ||||||||||| || || |||||||| |
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| T |
39009377 |
ttttgaaatcatggataatgacaatggcttttatatggtcaaattcgatcaaga |
39009430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 3662915 - 3662862
Alignment:
| Q |
235 |
ttttgaaatcatggataatgataatgatttttatatggttaagtttgatcaaga |
288 |
Q |
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||||||||||||||||||||| |||| ||||||||||| || || |||||||| |
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| T |
3662915 |
ttttgaaatcatggataatgacaatggcttttatatggtcaaattcgatcaaga |
3662862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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