View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17431_low_10 (Length: 295)
Name: NF17431_low_10
Description: NF17431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17431_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 40404420 - 40404215
Alignment:
| Q |
20 |
tcacttcactttgttcaattaatttacaagaaaacaaaatggttacttacaatggtgagaggaacaccgcaaaggaaatgatgttgcctgtaaaaacaaa |
119 |
Q |
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| T |
40404420 |
tcacttcactttgttcaattaatttacaagaaaacaaaatggttacttacaatggtgagaggaacaccgcaaaggaaatgatgttgcctgtaaaaacaaa |
40404321 |
T |
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| Q |
120 |
caagaaatatccatcaccacttgttaacaaatgactacttttattattgtttactatagcatttgtgttgaaaataaaaatatgacatatcgccatgcaa |
219 |
Q |
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| T |
40404320 |
caagaaatatccatcaccacttgttaacaaatgactacttttattattgtttactatagcatttgagttgaaaataaaaatatgacatatcgccatgcaa |
40404221 |
T |
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| Q |
220 |
tatata |
225 |
Q |
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|||||| |
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| T |
40404220 |
tatata |
40404215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 40404164 - 40404105
Alignment:
| Q |
223 |
atatgttaatatgtttccaattaacatgctctataactaaataaatttttactcttagaa |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40404164 |
atatgttaatatgtttccaattaacatgctctataactaaataaatttttactctaagaa |
40404105 |
T |
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