View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17431_low_12 (Length: 267)

Name: NF17431_low_12
Description: NF17431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17431_low_12
NF17431_low_12
[»] chr1 (4 HSPs)
chr1 (1-114)||(51854300-51854413)
chr1 (1-41)||(42772633-42772673)
chr1 (1-41)||(47914463-47914503)
chr1 (1-41)||(28238053-28238092)
[»] chr3 (7 HSPs)
chr3 (1-114)||(14175498-14175612)
chr3 (45-113)||(54419112-54419180)
chr3 (1-59)||(952874-952932)
chr3 (1-41)||(41828362-41828402)
chr3 (1-36)||(50833921-50833956)
chr3 (1-36)||(50841897-50841932)
chr3 (135-168)||(15439404-15439437)
[»] chr4 (1 HSPs)
chr4 (1-105)||(6980694-6980798)
[»] chr6 (8 HSPs)
chr6 (1-62)||(29535699-29535760)
chr6 (1-62)||(29535469-29535530)
chr6 (63-114)||(29534011-29534062)
chr6 (63-114)||(29535221-29535272)
chr6 (3-41)||(29533981-29534019)
chr6 (3-41)||(29535264-29535302)
chr6 (135-168)||(29534081-29534114)
chr6 (135-168)||(29535169-29535202)
[»] chr7 (3 HSPs)
chr7 (5-60)||(40722778-40722833)
chr7 (1-41)||(39445160-39445200)
chr7 (135-168)||(42394110-42394143)
[»] scaffold0007 (2 HSPs)
scaffold0007 (1-41)||(252395-252435)
scaffold0007 (63-105)||(252427-252469)
[»] chr8 (1 HSPs)
chr8 (1-41)||(9375325-9375365)
[»] chr5 (1 HSPs)
chr5 (1-41)||(29656777-29656817)
[»] chr2 (3 HSPs)
chr2 (1-45)||(43800273-43800317)
chr2 (1-37)||(9059739-9059775)
chr2 (135-167)||(17435167-17435199)
[»] scaffold0071 (1 HSPs)
scaffold0071 (135-168)||(22754-22787)


Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 51854413 - 51854300
Alignment:
Q  1 tatgttattaataacaatgatatttttcaaagcaaaaatttaacagcaaaaaattgacccaacaaaaatttgaccaagcccataaatcatatcaccactc 100  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  51854413 tatgttattaataacaatgatattttccaaagcaagaatttaacagcaaaaaattgacccaacaaaaatttgaccaagcccctaaatcatatcaccactc 51854314  T
Q  101 cctctttttcctca 114  Q
    ||||||||||||||    
T  51854313 cctctttttcctca 51854300  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 42772633 - 42772673
Alignment:
Q  1 tatgttattaataacaatgatatttttcaaagcaaaaattt 41  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  42772633 tatgttattaataacaatgatattttccaaagcaaaaattt 42772673  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 47914503 - 47914463
Alignment:
Q  1 tatgttattaataacaatgatatttttcaaagcaaaaattt 41  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  47914503 tatgttattaataacaatgatattttccaaagcaaaaattt 47914463  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28238092 - 28238053
Alignment:
Q  1 tatgttattaataacaatgatatttttcaaagcaaaaattt 41  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  28238092 tatgttattaataacaatgata-ttttcaaagcaaaaattt 28238053  T

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Target: chr3 (Bit Score: 87; Significance: 9e-42; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 14175612 - 14175498
Alignment:
Q  1 tatgttattaataacaatgatatttttcaaagcaaaaatttaaca-gcaaaaaattgacccaacaaaaatttgaccaagcccataaatcatatcaccact 99  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||| ||||||||||||||||||| | |||||||||||||||||    
T  14175612 tatgttattaataacaatgatattttccaaagcaaaaatttaacaagcaaaaaattaaccgaacaaaaatttgaccaagctcctaaatcatatcaccact 14175513  T
Q  100 ccctctttttcctca 114  Q
    |||||||||||||||    
T  14175512 ccctctttttcctca 14175498  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 54419112 - 54419180
Alignment:
Q  45 agcaaaaaattgacccaacaaaaatttgaccaagcccataaatcatatcaccactccctctttttcctc 113  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  54419112 agcaaaaaattgacctaacaaaaatttgaccaagcccttaaatcatatcaccagtccctctttttcctc 54419180  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 952932 - 952874
Alignment:
Q  1 tatgttattaataacaatgatatttttcaaagcaaaaatttaacagcaaaaaattgacc 59  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  952932 tatgttattaataacaatgatattttccaaagcaaaaatttaacagcaaaaaattgacc 952874  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41828362 - 41828402
Alignment:
Q  1 tatgttattaataacaatgatatttttcaaagcaaaaattt 41  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  41828362 tatgttattaataacaatgatattttccaaagcaaaaattt 41828402  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 50833921 - 50833956
Alignment:
Q  1 tatgttattaataacaatgatatttttcaaagcaaa 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  50833921 tatgttattaataacaatgatattttccaaagcaaa 50833956  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 50841932 - 50841897
Alignment:
Q  1 tatgttattaataacaatgatatttttcaaagcaaa 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  50841932 tatgttattaataacaatgatattttccaaagcaaa 50841897  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 168
Target Start/End: Complemental strand, 15439437 - 15439404
Alignment:
Q  135 tttttaaaaccccatattatttaaaaacattcag 168  Q
    |||||||||||||| |||||||||||||||||||    
T  15439437 tttttaaaaccccagattatttaaaaacattcag 15439404  T

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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 6980694 - 6980798
Alignment:
Q  1 tatgttattaataacaatgatatttttcaaagcaaaaatttaacagcaaaaaattgacccaacaaaaatttgaccaagcccataaatcatatcaccactc 100  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||    
T  6980694 tatgttattaatatcaatgatattttccaaagcaaaaatttaacagcaaaaaattgacctaacaaaaatttgaccaagcccttaaatcatatcaccagtc 6980793  T
Q  101 cctct 105  Q
    |||||    
T  6980794 cctct 6980798  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 29535760 - 29535699
Alignment:
Q  1 tatgttattaataacaatgatatttttcaaagcaaaaatttaacagcaaaaaattgacccaa 62  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  29535760 tatgttattaataacaatgatattttccaaagcaaaaatttaacagcaaaaaatagacccaa 29535699  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 29535530 - 29535469
Alignment:
Q  1 tatgttattaataacaatgatatttttcaaagcaaaaatttaacagcaaaaaattgacccaa 62  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||    
T  29535530 tatgttattaataacaatgatattttccaaagcaaaaatttaacaacaaaaaatagacccaa 29535469  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 29534011 - 29534062
Alignment:
Q  63 caaaaatttgaccaagcccataaatcatatcaccactccctctttttcctca 114  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  29534011 caaaaatttgaccatgcccctaaatcatatcaccactccctctttttcctca 29534062  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 29535272 - 29535221
Alignment:
Q  63 caaaaatttgaccaagcccataaatcatatcaccactccctctttttcctca 114  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  29535272 caaaaatttgaccatgcccctaaatcatatcaccactccctctttttcctca 29535221  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 29533981 - 29534019
Alignment:
Q  3 tgttattaataacaatgatatttttcaaagcaaaaattt 41  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  29533981 tgttattaataacaatgatattttccaaagcaaaaattt 29534019  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 29535302 - 29535264
Alignment:
Q  3 tgttattaataacaatgatatttttcaaagcaaaaattt 41  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  29535302 tgttattaataacaatgatattttccaaagcaaaaattt 29535264  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 29534081 - 29534114
Alignment:
Q  135 tttttaaaaccccatattatttaaaaacattcag 168  Q
    |||||||||||||| |||||||||||||||||||    
T  29534081 tttttaaaaccccagattatttaaaaacattcag 29534114  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 168
Target Start/End: Complemental strand, 29535202 - 29535169
Alignment:
Q  135 tttttaaaaccccatattatttaaaaacattcag 168  Q
    |||||||||||||| |||||||||||||||||||    
T  29535202 tttttaaaaccccagattatttaaaaacattcag 29535169  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 40722778 - 40722833
Alignment:
Q  5 ttattaataacaatgatatttttcaaagcaaaaatttaacagcaaaaaattgaccc 60  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  40722778 ttattaataacaatgatattttccaaagcaaaaatttaacaacaaaaaattgaccc 40722833  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39445160 - 39445200
Alignment:
Q  1 tatgttattaataacaatgatatttttcaaagcaaaaattt 41  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  39445160 tatgttattaataacaatgatattttccaaagcaaaaattt 39445200  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 168
Target Start/End: Complemental strand, 42394143 - 42394110
Alignment:
Q  135 tttttaaaaccccatattatttaaaaacattcag 168  Q
    |||||||||||||| |||||||||||||||||||    
T  42394143 tttttaaaaccccagattatttaaaaacattcag 42394110  T

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Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 252395 - 252435
Alignment:
Q  1 tatgttattaataacaatgatatttttcaaagcaaaaattt 41  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  252395 tatgttattaataacaatgatattttccaaagcaaaaattt 252435  T

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Target: scaffold0007; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 252427 - 252469
Alignment:
Q  63 caaaaatttgaccaagcccataaatcatatcaccactccctct 105  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  252427 caaaaatttgaccaagcccttaaatcatatcaccactctctct 252469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 9375365 - 9375325
Alignment:
Q  1 tatgttattaataacaatgatatttttcaaagcaaaaattt 41  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  9375365 tatgttattaataacaatgatattttccaaagcaaaaattt 9375325  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29656817 - 29656777
Alignment:
Q  1 tatgttattaataacaatgatatttttcaaagcaaaaattt 41  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  29656817 tatgttattaataacaatgatattttccaaagcaaaaattt 29656777  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 43800317 - 43800273
Alignment:
Q  1 tatgttattaataacaatgatatttttcaaagcaaaaatttaaca 45  Q
    |||||||||||||||||||||||||| || |||||||||||||||    
T  43800317 tatgttattaataacaatgatattttccacagcaaaaatttaaca 43800273  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9059775 - 9059739
Alignment:
Q  1 tatgttattaataacaatgatatttttcaaagcaaaa 37  Q
    |||||||||||||||||||||||||| ||||||||||    
T  9059775 tatgttattaataacaatgatattttccaaagcaaaa 9059739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 17435167 - 17435199
Alignment:
Q  135 tttttaaaaccccatattatttaaaaacattca 167  Q
    |||||||||||||| ||||||||||||||||||    
T  17435167 tttttaaaaccccaaattatttaaaaacattca 17435199  T

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Target: scaffold0071 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 22754 - 22787
Alignment:
Q  135 tttttaaaaccccatattatttaaaaacattcag 168  Q
    |||||||||||||| |||||||||||||||||||    
T  22754 tttttaaaaccccagattatttaaaaacattcag 22787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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