View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17431_low_14 (Length: 264)
Name: NF17431_low_14
Description: NF17431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17431_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 1105007 - 1105245
Alignment:
| Q |
14 |
agacatatttttgtcaactatatagaaaataaaaatcaaactatgttcttggattcccttgaatcaacacatttgaggtatctatcgctttctagaccat |
113 |
Q |
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| T |
1105007 |
agacatgtttttgtcaactatatagaaaataaaaatcaaactatgttcttggattcccttgaatcaacacatttgaggcatctatcgctttctagaccat |
1105106 |
T |
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| Q |
114 |
caaatcaagattgagcactccacattctgattttgatgatttagttctaaaaaccaaaatgaaaatacattttccaacttaaaatggtaaatttttattg |
213 |
Q |
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| T |
1105107 |
caaatcaagattgagcactccacattctgattttgatgatttagttctaaaaaccaaaatgaaaatacattttccaacttaaaatggtaaatttttactg |
1105206 |
T |
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| Q |
214 |
tttcaaagcaagttagaccaaagcttgagtggagtaact |
252 |
Q |
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| T |
1105207 |
tttcaaagcaagttagaccaaagcttgagtggagtaact |
1105245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 252
Target Start/End: Original strand, 1104033 - 1104264
Alignment:
| Q |
23 |
tttgtcaactatatagaaaataaaaatcaaactatgttcttggattcccttgaatcaaca-catttgaggtatctatcgctttctagaccatcaaatcaa |
121 |
Q |
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|||||||| ||||||||||||| ||||||| ||||||||| |||| |||||||||||| |||||||| ||| ||| | |||||||||||||||| |
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| T |
1104033 |
tttgtcaattatatagaaaatacaaatcaacttatgttcttagatttccttgaatcaaccgcatttgagactcatattgctatttagaccatcaaatcaa |
1104132 |
T |
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| Q |
122 |
gattgagcactccacattctgattttgatgatttagttctaaaaac-caaaatgaaaatacattttccaacttaaaatggtaaatttttattgtttcaaa |
220 |
Q |
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| T |
1104133 |
gaccggacacctcacattcacattttaatgatttcgttctaaaaagacaaaatcaaaatatattttccgactcaatgtggtaaatttttaccgtttcaaa |
1104232 |
T |
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| Q |
221 |
gcaagttagaccaaagcttgagtggagtaact |
252 |
Q |
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| T |
1104233 |
gcaagtttgaccaaagttttagtggagtaact |
1104264 |
T |
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