View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17431_low_16 (Length: 242)
Name: NF17431_low_16
Description: NF17431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17431_low_16 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold1598 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 29535737 - 29535947
Alignment:
| Q |
15 |
aatatcattgttattaataacatatatcggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29535737 |
aatatcattgttattaataacatatattggtaagtgctagtaggtatgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaa |
29535836 |
T |
|
| Q |
115 |
attttagggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaataagattaaggagtaagggata |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
29535837 |
attttagggttatcacatttagcattaaatgctacaattttggagccaaatttctagggttaaattgttgcaacctaataagattaaggagtaagggata |
29535936 |
T |
|
| Q |
215 |
tagctgagtag |
225 |
Q |
| |
|
||||||||||| |
|
|
| T |
29535937 |
tagctgagtag |
29535947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 15 - 213
Target Start/End: Original strand, 29535507 - 29535699
Alignment:
| Q |
15 |
aatatcattgttattaataacatatatcggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29535507 |
aatatcattgttattaataacatatattggtaagtgctagtaggtatgttccaataaaataatttgaaattcaaatttccaaacactttagagccaaatt |
29535606 |
T |
|
| Q |
115 |
attttagggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaataagattaaggagtaagggat |
213 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||| |||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
29535607 |
tttttagggttatctcat------ttaaatgctgcaattttgaagccaaatttatagggttaagttgttgcaacctaataagattaaggagtaagggat |
29535699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 213
Target Start/End: Original strand, 29535281 - 29535469
Alignment:
| Q |
15 |
aatatcattgttattaataacatatatcggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaa |
114 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29535281 |
aatatcattgttattaataaca---at-ggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaatt |
29535376 |
T |
|
| Q |
115 |
attttagggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaataagattaaggagtaagggat |
213 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
29535377 |
tttttagggttatctcat------ttaaatgctgcaattttggagccaaatttatagggttaagttgttgcaacctaataagattaaggagtaagggat |
29535469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 29534002 - 29533847
Alignment:
| Q |
15 |
aatatcattgttattaataacatatatcggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaa |
114 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29534002 |
aatatcattgttattaataaca-atattggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaatt |
29533904 |
T |
|
| Q |
115 |
attttagggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaa |
177 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
29533903 |
tttttagggttatctcat------ttaaatgctgcaattttggagacaaatttatagggttaa |
29533847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 5169036 - 5168955
Alignment:
| Q |
133 |
ttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgc-aatctaataagattaaggagtaagggat |
213 |
Q |
| |
|
|||||||||||||||||| |||| ||| |||| | |||||||||| |||||| || |||| || |||||||||||||||| |
|
|
| T |
5169036 |
ttagcattaaatgctgcagttttagaggcaaaaatttagggttaaattgttgctaacctaacaactttaaggagtaagggat |
5168955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 907747 - 907806
Alignment:
| Q |
153 |
tttggagccaaatttctagggttaaactgttgca-atctaataagattaaggagtaaggga |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||| || | ||||||| |||||||||||||||| |
|
|
| T |
907747 |
tttggagccaaatttctagggttaat-tgttccagacctaataacattaaggagtaaggga |
907806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 54419104 - 54418905
Alignment:
| Q |
16 |
atatcattgttattaataacatatatcggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaaa |
115 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
54419104 |
atatcattgatattaataacatatattggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattctcaaacactttagagccaaaaaa |
54419005 |
T |
|
| Q |
116 |
ttttagggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaataagattaaggagtaagggatat |
215 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
54419004 |
atttagggttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaagggatat |
54418905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 14175589 - 14175785
Alignment:
| Q |
15 |
aatatcattgttattaataacatatatcggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175589 |
aatatcattgttattaataacatatattgataaatgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaa |
14175688 |
T |
|
| Q |
115 |
attttagggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaataagattaaggagtaaggga |
212 |
Q |
| |
|
| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
14175689 |
a-tttagggttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaaggga |
14175785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 41828385 - 41828184
Alignment:
| Q |
15 |
aatatcattgttattaataacatatatcggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41828385 |
aatatcattgttattaataacatatattggtaaatgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagggccaattt |
41828286 |
T |
|
| Q |
115 |
attttagggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaataagattaaggagtaagggata |
214 |
Q |
| |
|
||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
41828285 |
tttttagggttatctcacttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaagggata |
41828186 |
T |
|
| Q |
215 |
ta |
216 |
Q |
| |
|
|| |
|
|
| T |
41828185 |
ta |
41828184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 15 - 213
Target Start/End: Original strand, 952909 - 953104
Alignment:
| Q |
15 |
aatatcattgttattaataacatatatcggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
952909 |
aatatcattgttattaataacatatattggtaagtgctagtaggtttt---caataaaataatttgaaattcaaattcccaaacactttatagccaaaaa |
953005 |
T |
|
| Q |
115 |
attttagggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaataagattaaggagtaagggat |
213 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||| |||||| |||| |||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
953006 |
attttagggttatctcatttagcatttaatgctgtaatttttgagctaaatttctagggttaagttgttgcaacctaataagattaaggagtaagggat |
953104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 36 - 210
Target Start/End: Complemental strand, 41828188 - 41828013
Alignment:
| Q |
36 |
atatatcggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaaattttagggttatcacattta |
135 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| || ||| |
|
|
| T |
41828188 |
atatattggtaaatgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagggccaaatttttttagggttatctcactta |
41828089 |
T |
|
| Q |
136 |
gcattaaatgctgcaattttggagccaaatttctaggg-ttaaactgttgcaatctaataagattaaggagtaagg |
210 |
Q |
| |
|
||||| |||| || |||||||||||||||||| ||||| |||| |||||||| |||||||||||||||||||||| |
|
|
| T |
41828088 |
gcatttaatgttgtaattttggagccaaatttttagggtttaagttgttgcaacctaataagattaaggagtaagg |
41828013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 9640327 - 9640246
Alignment:
| Q |
133 |
ttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgc-aatctaataagattaaggagtaagggat |
213 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| | ||||||||| |||||| || |||| || |||||||||||||||| |
|
|
| T |
9640327 |
ttagcattaaatgctgcatttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaagggat |
9640246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 48761320 - 48761239
Alignment:
| Q |
133 |
ttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgc-aatctaataagattaaggagtaagggat |
213 |
Q |
| |
|
|||||||||||||||||| |||| ||| |||| | |||||||||| |||||| || |||| || |||||||||||||||| |
|
|
| T |
48761320 |
ttagcattaaatgctgcagttttagaggcaaaaatttagggttaaattgttgctaacctaacaactttaaggagtaagggat |
48761239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 50833944 - 50833912
Alignment:
| Q |
15 |
aatatcattgttattaataacatatatcggtaa |
47 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
50833944 |
aatatcattgttattaataacatatattggtaa |
50833912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 50841909 - 50841941
Alignment:
| Q |
15 |
aatatcattgttattaataacatatatcggtaa |
47 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
50841909 |
aatatcattgttattaataacatatattggtaa |
50841941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 213
Target Start/End: Original strand, 43800294 - 43800492
Alignment:
| Q |
15 |
aatatcattgttattaataacatatatcggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43800294 |
aatatcattgttattaataacatatattggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccacacactttagagccaaaaa |
43800393 |
T |
|
| Q |
115 |
attttagggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaataagattaaggagtaagggat |
213 |
Q |
| |
|
|||||||||||||| |||||| |||| ||| ||||||||| |||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
43800394 |
attttagggttatctcatttaacatttaatactgcaatttcggagtcaaatttctagggttaagttgttgcaacctaataagattaaggagtaagggat |
43800492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 9059752 - 9059951
Alignment:
| Q |
15 |
aatatcattgttattaataacatatatcggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9059752 |
aatatcattgttattaataacatatattggtaaatgctagtaggtttgtttcaataaaataatttgaaattcaaattcccaaacactttagagccaaatt |
9059851 |
T |
|
| Q |
115 |
attttagggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaataagattaaggagtaagggata |
214 |
Q |
| |
|
|| |||||||||| || |||||||| |||||||||||||| ||| ||||||| ||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
9059852 |
tttgtagggttatctcacttagcatttaatgctgcaattttagagtcaaatttttagggttaagttgttgcaacctaataagattaaggagtaagggata |
9059951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 12447157 - 12447244
Alignment:
| Q |
122 |
ggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaataagattaaggagtaag |
209 |
Q |
| |
|
||||||| || |||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
12447157 |
ggttatctcacttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaag |
12447244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 25890462 - 25890542
Alignment:
| Q |
133 |
ttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaataagattaaggagtaagggat |
213 |
Q |
| |
|
|||||||||| |||||| | ||||| |||||| | ||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
25890462 |
ttagcattaattgctgctaatttggctccaaatctttagggttaagttgttgcaacctaataagattaaggagtaagggat |
25890542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 4814683 - 4814602
Alignment:
| Q |
133 |
ttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaataagattaaggagtaagggata |
214 |
Q |
| |
|
|||||||||| |||||| | ||||| |||||| | ||||||||| |||||| ||||||| |||||||||||||||||| |
|
|
| T |
4814683 |
ttagcattaattgctgctaatttggctccaaatctttagggttaagtgtttgcaacctaataaaattaaggagtaagggata |
4814602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 41750667 - 41750623
Alignment:
| Q |
133 |
ttagcattaaatgctgcaattttggagccaaatttctagggttaa |
177 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | ||||||||| |
|
|
| T |
41750667 |
ttagcattaaatgctgcaattttagagccaaaaatttagggttaa |
41750623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 51854390 - 51854575
Alignment:
| Q |
15 |
aatatcattgttattaataacatatatcggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51854390 |
aatatcattgttattaataacatatattggtaagtgccagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaa |
51854489 |
T |
|
| Q |
115 |
attttagggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaataagatta |
200 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| |||||| |||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
51854490 |
attttagggttatctcatttagcatttaatgttgcaatcttggagccaaatttctagggttaagttgttgcaacctaataagatta |
51854575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 42772656 - 42772456
Alignment:
| Q |
15 |
aatatcattgttattaataacatatatcggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42772656 |
aatatcattgttattaataacatatattggtaaatgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagggccaattt |
42772557 |
T |
|
| Q |
115 |
attttagggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaataagattaaggagtaagggata |
214 |
Q |
| |
|
||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
42772556 |
tttttagggttatctcacttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaagggata |
42772457 |
T |
|
| Q |
215 |
t |
215 |
Q |
| |
|
| |
|
|
| T |
42772456 |
t |
42772456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 47914480 - 47914677
Alignment:
| Q |
15 |
aatatcattgttattaataacatatatcggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| || | | |
|
|
| T |
47914480 |
aatatcattgttattaataacatatattggtaaatgctaataggtttgttcctataaaataatttgaaattcaaattcccaaacactttagaggcagata |
47914579 |
T |
|
| Q |
115 |
attttagggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaataagattaaggagtaaggga |
212 |
Q |
| |
|
||||||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
47914580 |
tttttagggttatctcacttagcatttaatgctgcaattttggagccaaatttctaaggttaagttgttgcaacctaataagattaaggagtaaggga |
47914677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 28238069 - 28238252
Alignment:
| Q |
15 |
aatatcattgttattaataacatatatcggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
28238069 |
aatatcattgttattaataacatatattggtaaatgctagtaggtttgttccaataaaataatttgaaatttaaatttccaaacactttagggccaaatt |
28238168 |
T |
|
| Q |
115 |
attttagggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaataagat |
198 |
Q |
| |
|
||||||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||| |||||||| |||||||||| |
|
|
| T |
28238169 |
tttttagggttatctcacttagcatttaatgctgcaattttggagccaaatttctaaggttaagttgttgcaacctaataagat |
28238252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 93 - 215
Target Start/End: Complemental strand, 23261073 - 23260951
Alignment:
| Q |
93 |
ccaaacactttagagccaaaaaattttagggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaa |
192 |
Q |
| |
|
||||| ||||| |||||||| ||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
23261073 |
ccaaatactttggagccaaattttttaagggttatctcacttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaa |
23260974 |
T |
|
| Q |
193 |
taagattaaggagtaagggatat |
215 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
23260973 |
taagattaaggagtaagggatat |
23260951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 39445183 - 39444985
Alignment:
| Q |
15 |
aatatcattgttattaataacatatatcggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
39445183 |
aatatcattgttattaataacatatattggtaaatgctagtaggtttgttccaataaaataatttgaaattcaaatttccaaacactttagggccaaatt |
39445084 |
T |
|
| Q |
115 |
attttagggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaataagattaaggagtaagggat |
213 |
Q |
| |
|
||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||| |
|
|
| T |
39445083 |
tttttagggttatctcacttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaagagtaagggat |
39444985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 40722797 - 40722602
Alignment:
| Q |
15 |
aatatcattgttattaataacatatatcggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaa-aa |
113 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40722797 |
aatatcattgttattaataatatatattggtaaatgctagtaggtttgttcgaataaaataatttgaaattcaaatttccaaacactttagagccaattt |
40722698 |
T |
|
| Q |
114 |
aattttagggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaataagattaaggagtaag |
209 |
Q |
| |
|
||||||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||| |
|
|
| T |
40722697 |
ttttttaggattatctcacttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataaaatttaggagtaag |
40722602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 48829896 - 48829731
Alignment:
| Q |
22 |
ttgttattaataacatatatcggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaaattttag |
121 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | |||||| |
|
|
| T |
48829896 |
ttgttattaataacatatattgggaaatgctagtaggtttgttccaataaaataatttgaaattcaaattctcaaacactttagagctagatttttttag |
48829797 |
T |
|
| Q |
122 |
ggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaa |
187 |
Q |
| |
|
||||||| || |||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48829796 |
ggttatctcacttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaa |
48829731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 38 - 213
Target Start/End: Original strand, 85197 - 85364
Alignment:
| Q |
38 |
atatcggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaaattttagggttatcacatttagc |
137 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||| || ||||| |
|
|
| T |
85197 |
atattggtaaatgctagtaggtttgttccaataaaataatttgaaatttaaattcccaa--------gagccaaaattttttagggttatctcacttagc |
85288 |
T |
|
| Q |
138 |
attaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaataagattaaggagtaagggat |
213 |
Q |
| |
|
||| ||| |||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
85289 |
atttaatattgcaattttggagccaaaattctagggttaagttgttgcaacctaataagattaaggagtaagggat |
85364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 213
Target Start/End: Original strand, 29656794 - 29656992
Alignment:
| Q |
15 |
aatatcattgttattaataacatatatcggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
29656794 |
aatatcattgttattaataacatatattggtaaatgctagtaggtttgttccaataaaataatttgaaattcaaatttccaaacactttagggccaaatt |
29656893 |
T |
|
| Q |
115 |
attttagggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaataagattaaggagtaagggat |
213 |
Q |
| |
|
|| |||||||||| || |||||||| |||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||| ||||||||||| |
|
|
| T |
29656894 |
tttgtagggttatctcacttagcatttaatgctgcaattttggagccaaatttatagggttaagttgttgcaacctaataagattaaagagtaagggat |
29656992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 10647715 - 10647797
Alignment:
| Q |
133 |
ttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgc-aatctaataagattaaggagtaagggata |
214 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| | ||||||||| |||||| || |||| || ||||||||||||||||| |
|
|
| T |
10647715 |
ttagcattaaatgctgcagttttagagccaaaaatttagggttaagttgttgctaacctaacaactttaaggagtaagggata |
10647797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 6980717 - 6980520
Alignment:
| Q |
15 |
aatatcattgttattaataacatatatcggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaa |
114 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
6980717 |
aatatcattgatattaataacatatattggtaagtgctagtaggtttgatccaataaaataatttgaaattccaattctcaaacactttagagccaaaaa |
6980618 |
T |
|
| Q |
115 |
attttagggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaataagattaaggagtaagggat |
213 |
Q |
| |
|
| |||| ||||||| |||||| |||| |||||||||| ||||||||||||||| || ||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
6980617 |
aattta-ggttatctcatttaacatttaatgctgcaactttggagccaaatttttaaggttaaattgttgcaacctaataagattaaggagtaagggat |
6980520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 16032596 - 16032689
Alignment:
| Q |
116 |
ttttagggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaataagattaaggagtaag |
209 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
16032596 |
ttttagggttatctcatttagcatttaatgctgcaattttggagccaaatttctagggttaagttgttgcaacctaataagattaaggagtaag |
16032689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 56478867 - 56478988
Alignment:
| Q |
93 |
ccaaacactttagagccaaaaaattttagggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaa |
192 |
Q |
| |
|
||||| ||||| |||||||| ||| ||||||||| || |||||||| | |||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
56478867 |
ccaaatactttggagccaaattttttaagggttatctcacttagcatttagtgctgcaattttggagccaaatttctagggttaagttgttgcaacctaa |
56478966 |
T |
|
| Q |
193 |
taagattaaggagtaagggata |
214 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
56478967 |
taagattaaggagtaagggata |
56478988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 37341992 - 37342072
Alignment:
| Q |
133 |
ttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaataagattaaggagtaagggat |
213 |
Q |
| |
|
|||||||||| |||||| | ||||| |||||| | ||||||||| | |||||| ||||||||||||| ||||||||||| |
|
|
| T |
37341992 |
ttagcattaattgctgctaatttggctccaaatctttagggttaagttattgcaacctaataagattaatgagtaagggat |
37342072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 252418 - 252228
Alignment:
| Q |
15 |
aatatcattgttattaataacatatatcggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
252418 |
aatatcattgttattaataacatatattggtaaatgctagtaggtttgtttcaataaaataatttgaaattcaaattcccaatcactttagagccaaatt |
252319 |
T |
|
| Q |
115 |
attttagggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgcaatctaataagattaaggag |
205 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||||||||| | ||||||||||| | |||| |||||||| |||||||| |||||||| |
|
|
| T |
252318 |
tttttagggttatatcacttagcatttaatgctgcaattttgaaaccaaatttctatgattaagttgttgcaacctaataagtttaaggag |
252228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 9375342 - 9375504
Alignment:
| Q |
15 |
aatatcattgttattaataacatatatcggtaagtgctagtaggtttgttccaataaaataatttgaaattcaaattcccaaacactttagagccaaaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
9375342 |
aatatcattgttattaataacatatattggtaaatgctagtaggtttgttccaataaaataatttgaaattcaaatttccaaacactttagggccaaatt |
9375441 |
T |
|
| Q |
115 |
attttagggttatcacatttagcattaaatgctgcaattttggagccaaatttctagggttaa |
177 |
Q |
| |
|
||||||||||||| || |||||||| |||| |||| ||||||||||||||||||||| |||| |
|
|
| T |
9375442 |
tttttagggttatctcacttagcatttaatgttgcagttttggagccaaatttctaggattaa |
9375504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1598 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1598
Description:
Target: scaffold1598; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 257 - 176
Alignment:
| Q |
133 |
ttagcattaaatgctgcaattttggagccaaatttctagggttaaactgttgc-aatctaataagattaaggagtaagggat |
213 |
Q |
| |
|
|||||||||||||||||| |||| ||| |||| | |||||||||| |||||| || |||| || |||||||||||||||| |
|
|
| T |
257 |
ttagcattaaatgctgcagttttagaggcaaaaatttagggttaaattgttgctaacctaacaactttaaggagtaagggat |
176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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