View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17431_low_18 (Length: 201)

Name: NF17431_low_18
Description: NF17431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17431_low_18
NF17431_low_18
[»] chr4 (2 HSPs)
chr4 (6-172)||(18343150-18343316)
chr4 (83-129)||(22101579-22101625)
[»] chr2 (1 HSPs)
chr2 (6-172)||(36840925-36841091)
[»] scaffold0002 (1 HSPs)
scaffold0002 (6-171)||(164053-164218)
[»] chr3 (1 HSPs)
chr3 (24-172)||(18375002-18375148)
[»] scaffold1779 (1 HSPs)
scaffold1779 (9-138)||(395-524)
[»] scaffold0702 (1 HSPs)
scaffold0702 (6-58)||(7150-7202)
[»] chr8 (1 HSPs)
chr8 (6-58)||(35195235-35195287)
[»] chr7 (1 HSPs)
chr7 (35-171)||(46634322-46634463)
[»] chr5 (1 HSPs)
chr5 (6-54)||(10258389-10258437)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 6 - 172
Target Start/End: Complemental strand, 18343316 - 18343150
Alignment:
Q  6 gaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatcca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18343316 gaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggggtcccagaaaatatagctagaaaggctatttcaatagcggcatcca 18343217  T
Q  106 aaatgcctatacgaactcaattcattctttcagaataatcattagaacgaaataggtctttagtatg 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343216 aaatgcctatacgaactcaattcattctttcagaataatcattagaacgaaataggtctttagtatg 18343150  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 22101625 - 22101579
Alignment:
Q  83 ggctatttcaatagcggcatccaaaatgcctatacgaactcaattca 129  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  22101625 ggctatttcaatagcggcatccaaaatgtctatacgaactcaattca 22101579  T

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Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 6 - 172
Target Start/End: Complemental strand, 36841091 - 36840925
Alignment:
Q  6 gaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatcca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36841091 gaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggggtcccagaaaatatagctagaaaggctatttcaatagcggcatcca 36840992  T
Q  106 aaatgcctatacgaactcaattcattctttcagaataatcattagaacgaaataggtctttagtatg 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36840991 aaatgcctatacgaactcaattcattctttcagaataatcattagaacgaaataggtctttagtatg 36840925  T

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Target: scaffold0002 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 6 - 171
Target Start/End: Original strand, 164053 - 164218
Alignment:
Q  6 gaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatcca 105  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  164053 gaatattgggtagctgtcgttaaacccgacaaaatactttatgaaatgggcggggtcccagaaaatatagctagaaaggctatttcaatagcggcatcca 164152  T
Q  106 aaatgcctatacgaactcaattcattctttcagaataatcattagaacgaaataggtctttagtat 171  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  164153 aaatgcctataagaactcaattcattctttcagaataatcattagatcgaaataggtctttagtat 164218  T

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Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 24 - 172
Target Start/End: Original strand, 18375002 - 18375148
Alignment:
Q  24 gttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactc 123  Q
    |||||||| | | ||||||||||||||||||| ||  ||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  18375002 gttaaacctgactaaatactttatgaaatgggggg--tcccaaaaaatatagctagaaagaatatttcaatagcggcatccaaaatgcctatacgaactc 18375099  T
Q  124 aattcattctttcagaataatcattagaacgaaataggtctttagtatg 172  Q
    |||| ||||||| |||||||  ||||||||||||||| |||||| ||||    
T  18375100 aatttattctttgagaataactattagaacgaaatagatctttaatatg 18375148  T

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Target: scaffold1779 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: scaffold1779
Description:

Target: scaffold1779; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 395 - 524
Alignment:
Q  9 tattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaa 108  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| | || ||  | ||||||||||| ||||||||||||||||||||||| || ||||    
T  395 tattgggtagctgtcgttaaaccgggcagaatactttatgaaatgagtggagtagccgaaaatatagccagaaaggctatttcaatagcggcgtcaaaaa 494  T
Q  109 tgcctatacgaactcaattcattctttcag 138  Q
    ||||||||  ||| ||||||||| ||||||    
T  495 tgcctataaaaacgcaattcattatttcag 524  T

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Target: scaffold0702 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 7150 - 7202
Alignment:
Q  6 gaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggagg 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7150 gaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggagg 7202  T

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Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 35195235 - 35195287
Alignment:
Q  6 gaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggagg 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35195235 gaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggagg 35195287  T

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Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 46634463 - 46634322
Alignment:
Q  35 caaaatactttatgaaatgggaggcgtcccagaaaa-tatagctagaaaggctatttcaatagcggc-----atccaaaatgcctatacgaactcaattc 128  Q
    ||||||| ||||||||||||||||  | ||| |||| |||||||||||| |||||||||||||| ||     |||||| |||||||||| |||  ||| |    
T  46634463 caaaatattttatgaaatgggagggattccaaaaaaatatagctagaaaagctatttcaatagcagcgcgacatccaagatgcctatacaaacctaat-c 46634365  T
Q  129 attctttcagaataatcattagaacgaaataggtctttagtat 171  Q
    |||||||||||| ||| |||||||| ||||| |||||||||||    
T  46634364 attctttcagaagaataattagaaccaaatatgtctttagtat 46634322  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 10258389 - 10258437
Alignment:
Q  6 gaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgg 54  Q
    |||||||||||||||||| ||||| |||| |||||||||||||||||||    
T  10258389 gaatattgggtagctgtcattaaatccggtaaaatactttatgaaatgg 10258437  T

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