View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17431_low_2 (Length: 528)
Name: NF17431_low_2
Description: NF17431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17431_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 509
Target Start/End: Complemental strand, 5226972 - 5226483
Alignment:
| Q |
18 |
attcctatgccttaaagaacatcaat---tagatccctcccttgtgtgttgaatgtgaatacaaccacaatacattgccatcttaagttagggctcatac |
114 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5226972 |
attcctatgccttaaaaaacatcaataattagatccctcccttgtgtgttgaatgtgaatacaaccacaatacatcgccatcttaagttagggctcatac |
5226873 |
T |
|
| Q |
115 |
aaagacattcaaattctataaagccttttctaaatgaagagaataaaagagctagattacattcttatatatatcaatgcttgaaaatgtcatcttgatc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5226872 |
aaagacattcaaattctataaagccttttctaaatgaagagaataaaagagctagattacattcttatatat--caatgcttgaaaatgtcatcttgatc |
5226775 |
T |
|
| Q |
215 |
caacttgatgtataccatcattcatgttgatgagaaatcgttgtatataacaaagaagtctgagaattgctacttactacaagatgaagatccaaaacac |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5226774 |
caacttgatgtataccatcattcatgttgatgagaaatcgttgtatataacaaacaagtctgagaattgctacttactacaagatgaagatccaaaacac |
5226675 |
T |
|
| Q |
315 |
acttatagaagtaaaaaatttattggaaagttttgttcttagttacactactagctcacccaaggtttgacgcaaagtgaaatggactattgtatnnnnn |
414 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
5226674 |
acttaaagaagtaaaaaatttattggaaagttttgttcttagttac---actagctcacccaaggtttgatgcaaagtgaaatggactattgtctaaaaa |
5226578 |
T |
|
| Q |
415 |
nnttggtgtatcttcctttgtcacacaagagaagactaagaggtcaaactataatagagttacgtgaacaccatagatcatatttaatttccact |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5226577 |
aattggtgtatcttcctttgtcacacaagagaagactaagaggtcaaactataatagagttacgtgaacactatagatcatatttaatttccact |
5226483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University