View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17431_low_3 (Length: 526)
Name: NF17431_low_3
Description: NF17431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17431_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 20 - 509
Target Start/End: Complemental strand, 43529555 - 43529066
Alignment:
| Q |
20 |
tatctccaacctctcgccgtcaaattcaatccacgcacgaatattctccccagtgttcatctgaaccggaacgaagcttccggtggaattataataccct |
119 |
Q |
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| T |
43529555 |
tatctccaacctctcgccgtcaaattcaatccacgcacgaatattctccccagtgttcatctgaaccggaacgaagcttccggtggaattataataccct |
43529456 |
T |
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| Q |
120 |
gcaggagtttgaattttggattcgatgttattcaaatcaattccgatgtgattactgtctttatcattaaactcagggttttgaccagtgtcaaattcaa |
219 |
Q |
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| T |
43529455 |
gcaggagtttgaattttggattcgatgttattcaaatcaattccgatgtgattgctgtctttatcattaaactcagggttttgaccagtgtcaaattcaa |
43529356 |
T |
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| Q |
220 |
cggcgatgagagggaaaattgaagaagagctaatcgagtttgtgaataagccgaaatattgactagcgagtgcgccgggaggggaagtggtgttgcagag |
319 |
Q |
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| T |
43529355 |
cggcgatgagagggaaaattgaagaagagctaatcgagtttgtgaataagccgaaatattgactagcgagtgcgccgggaggggaagtggtgttgcagag |
43529256 |
T |
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| Q |
320 |
gacgaaagcgagaccgaagccagggctggtggggttgtctggtaagatggagaagatgaaggaagtggagaaggaagtgatgtttgttgaggaaggtgaa |
419 |
Q |
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| T |
43529255 |
gacgaaagcgagaccgaagccagggctggtggggttgtctggtaagatggagaagatgaaggaagtggagaaggaagtgatgtttgttgaggaaggtgaa |
43529156 |
T |
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| Q |
420 |
ggtttgagcatggggagtttagtggggtggaaggcacggccgtaagagtattggttggagtcgttggtcatgcggatgacaggtggttgg |
509 |
Q |
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| T |
43529155 |
ggtttgagcatggggagtttagtggggtggaaggcacggccgtaagagtattggttggagtcgttggtcatgcggatgacaggtggttgg |
43529066 |
T |
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