View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17431_low_5 (Length: 476)
Name: NF17431_low_5
Description: NF17431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17431_low_5 |
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| [»] scaffold0581 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 140 - 459
Target Start/End: Complemental strand, 35629060 - 35628743
Alignment:
| Q |
140 |
gctctcaaactcagagccttttaggtcagagttctcgggctcagagtccttggaagaatcttaaacagaattagtagaacaaggtggattccttgcactt |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35629060 |
gctctcaaactcagagccttttaggtcagagttctcgggctcagagtccttggaagaatcttaaacagaattagtagaacaaggtggattccttgcagtt |
35628961 |
T |
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| Q |
240 |
tatgataaggttgatacagttacatatgactctatctcacagaaaaagctctaaaatcttcaactaggatcaatgcttattgttgtatatgagatgctca |
339 |
Q |
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| T |
35628960 |
tatgataaggttgatagagttatatatgact--atctcacagaaaaagctctaaaatctgcatctaggatcaatgcttattgtggtatatgaggtgcaca |
35628863 |
T |
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| Q |
340 |
tctaatggtataaagttagtttgtgactgctttatgttgtgctacgtatgtggaattaaatctaaatgtctatagtttccaatttttatgaaaggagttt |
439 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
35628862 |
tctaatggtataaagttagttggtgactgctttatgctgtgctatgtatgtggaattaaatctaaatttctatagtttccaatttttattaaaggagttt |
35628763 |
T |
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| Q |
440 |
gtggttatgtaatttgatgt |
459 |
Q |
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| T |
35628762 |
gtggttatgtaatttgatgt |
35628743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 35629222 - 35629093
Alignment:
| Q |
17 |
aaagctcatctgacagacctacaccatctgcttttgcacggtctggattaaccactcattggctgcagaggctgaagaagactattaaagactggtttaa |
116 |
Q |
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| T |
35629222 |
aaagctcatctgacagacctacaccatctgcttttgcacggtctggattaaccactcattggctgcagaggctgaagaagactattaaagaccggtttaa |
35629123 |
T |
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| Q |
117 |
aggaagttcatcgcatgcatctggctctca |
146 |
Q |
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| T |
35629122 |
aggaagttcatcgaatgcatctggctctca |
35629093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 35635642 - 35635528
Alignment:
| Q |
17 |
aaagctcatctgacagacctacaccatctgcttttgcacggtctggattaaccactcattggctgcagaggctgaagaagactattaaagactggtttaa |
116 |
Q |
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| T |
35635642 |
aaagctcatctgccagacctacaacatcagcttttgcagagtctggattaaccatgcatgggctgcagaggctgcagaagactattaaaaaccggtttca |
35635543 |
T |
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| Q |
117 |
aggaagttcatcgca |
131 |
Q |
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| T |
35635542 |
agcaagttcatcgca |
35635528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 35635486 - 35635446
Alignment:
| Q |
140 |
gctctcaaactcagagccttttaggtcagagttctcgggct |
180 |
Q |
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| T |
35635486 |
gctctcaaactcagagccttttgggtcagagttctcgggct |
35635446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 35634073 - 35634012
Alignment:
| Q |
140 |
gctctcaaactcagagccttttaggt---cagagttctcgggctcagagtccttggaagaat |
198 |
Q |
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| T |
35634073 |
gctctcaaactcagagccttttgggtggtcagagttctcgggctcagagcccttgaaagaat |
35634012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 2780 - 2744
Alignment:
| Q |
144 |
tcaaactcagagccttttaggtcagagttctcgggct |
180 |
Q |
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| T |
2780 |
tcaaactcagagccttttaggtcagagttctcgggct |
2744 |
T |
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