View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17431_low_6 (Length: 434)
Name: NF17431_low_6
Description: NF17431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17431_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 196 - 417
Target Start/End: Complemental strand, 5729542 - 5729316
Alignment:
| Q |
196 |
cttgatttacgtgttctttcacaagaaaaataataagtataacataattattcttgagttgtgcattctctatttatgtannnnnnnn-cgtaagtttgc |
294 |
Q |
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| T |
5729542 |
cttgatttacgtgttctttcacaagaaaaataataagtataacctaattattcttgagttgtgcattctctatttatgtatttttttttcgtaagtttgt |
5729443 |
T |
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| Q |
295 |
ggagaaagaatacttactcatata-----ctaattcatatagaaacaagtataacataattttttctcttaatataggttactcaaaactgtacggaaca |
389 |
Q |
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| T |
5729442 |
ggagaaagaatacttactcatataggttactaattcatatagaaacaagtataacataatttttt-tcttaatataggttactcaaaactgtacggaaca |
5729344 |
T |
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| Q |
390 |
tgactcaacattactagcactaaccact |
417 |
Q |
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| T |
5729343 |
tgactcaacattactagcactaaccact |
5729316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 5729736 - 5729611
Alignment:
| Q |
1 |
aaattaatctcgctaagattggcgatcctcgcccggttatctctcctattagaggttgattcccatatgcctcaaaaattgaaacgacatggagaatagg |
100 |
Q |
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| T |
5729736 |
aaattaatctcgctaagattggcgatccttgctcggttatctctcctattagaggttgattcccatatgcctcaaaaatcgaaacgaca-agagaatagg |
5729638 |
T |
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| Q |
101 |
ttgctaaaaagcttatcatgattcttc |
127 |
Q |
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| T |
5729637 |
ttgctaaaaagcttatcatgattcttc |
5729611 |
T |
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