View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17431_low_7 (Length: 409)
Name: NF17431_low_7
Description: NF17431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17431_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 388
Target Start/End: Complemental strand, 41379655 - 41379265
Alignment:
| Q |
12 |
cagagagaccaaaatccaaattaagatcgaaattctgtttaatcttgttggatttggcgtgttcgagatcggattcttgaacaacaaaagcatatgatgt |
111 |
Q |
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| T |
41379655 |
cagagagaccgaaatccaaattaagatcgaaattctgtttagtcttgttggatttggcgtgttcgagatcagattcttgaacaacaaaaacatatgaagt |
41379556 |
T |
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| Q |
112 |
gtctaagctaatggttggcatatcattagacatgattttactgccaaaatggtgtggtctgagggggaagtgactcacattacttaagcatatgatgtgg |
211 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41379555 |
gtctaagctaatggttagcatatcattagacatgattttactaccaaaatgatgtggtctgagggggaagtgactcacattacttaagcatatgatgtgg |
41379456 |
T |
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| Q |
212 |
ggttcgattattgacttatgcgtaaga----------------atacataaccgttatatgcgctgaagatccttgaaagagtttgtctctgcagactgc |
295 |
Q |
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||||||| |||||||||||||||| || | |||||| |||||||||||||||||||||| ||||||| |||||||||||||| | |
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| T |
41379455 |
ggttcgactattgacttatgcgtaggaaatttcaccatttaatagacataatcgttatatgcgctgaagatcctcgaaagag--tgtctctgcagactac |
41379358 |
T |
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| Q |
296 |
agtttctaacgaattaggtgatacctagagaaaccaaaacacatattttgctttggtataannnnnnnccagatgctggtttattatgcctag |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41379357 |
agtttctaacgaattaggtgatacctagagaaaccaaaacacatattttgctttggtataatttttttccagatgctggtttattatgcctag |
41379265 |
T |
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