View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17431_low_8 (Length: 386)
Name: NF17431_low_8
Description: NF17431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17431_low_8 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 22 - 379
Target Start/End: Complemental strand, 3621046 - 3620686
Alignment:
| Q |
22 |
agacacaagctattttcctttcattttttgtttcagattatattcctttcttggggtggattgataaactcaccggggcaattgctcgtgttgacaacac |
121 |
Q |
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| T |
3621046 |
agacacaagctattttcctttccttttttgtttcagattatattccttttatggggtgggttgataaactcacaggggcaattgctcgtgttgacaacac |
3620947 |
T |
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| Q |
122 |
tttcaaggctttggatgagttttttgaacaagtgcttaaggaacatctcaatcctaataataggaagaaagatgatgaagagaaggatatagttgacgtg |
221 |
Q |
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| T |
3620946 |
tttcaaggctttggatgagttctttgaacaagtcctcaaggaacatctcaatcctaataataggaaaaaagatgatgaagagaaggatatagttgacgtg |
3620847 |
T |
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| Q |
222 |
ttacttgagttaaaaaatcagggtcgtctctcaattgatctcaccaatgataacatcaaagctgtcgttatggtatgttctcatgattttcaatat---t |
318 |
Q |
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| T |
3620846 |
ttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaataatcacatcaaagccgtcgttatggtatgttctcgtgacttttaatatatat |
3620747 |
T |
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| Q |
319 |
tctttttggttatatgccctgttatatagtgttcagaacactcttttcaagatattcttcg |
379 |
Q |
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| T |
3620746 |
atttttttgttttataccctgttatataatgttccgaacactcttttcaagatattgttcg |
3620686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 3631448 - 3631164
Alignment:
| Q |
17 |
tcatcagacacaagctattttcctttcattttttgtttcagattatattcctttcttggggtggattgataaactcaccggggcaattgctcgtgttgac |
116 |
Q |
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| T |
3631448 |
tcatgagacagaagctattttcctttccttctttgtttcagatcatattccttttatggggtggattgataaactcactggggcaaatgctcgtgttgac |
3631349 |
T |
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| Q |
117 |
aacactttcaaggctttggatgagttttttgaacaagtgcttaaggaacatctcaatcctaataataggaagaaagatgatgaagagaaggatatagttg |
216 |
Q |
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|| |||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
3631348 |
aagactttcaaggctttggatgagtttcttgaacaagtccttcaagaacatctcaatcctaataatcggaagaaagatgaagaagagaaggatatagttg |
3631249 |
T |
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| Q |
217 |
acgtgttacttgagttaaaaaatcagggtcgtctctcaattgatctcaccaatgataacatcaaagctgtcgttatggtatgttc |
301 |
Q |
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| T |
3631248 |
acgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaatgatcacatcaaatccgtccttatggtatgttc |
3631164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 14637 - 14921
Alignment:
| Q |
17 |
tcatcagacacaagctattttcctttcattttttgtttcagattatattcctttcttggggtggattgataaactcaccggggcaattgctcgtgttgac |
116 |
Q |
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|||| ||||| |||||||||||||||| || |||||||||||| |||||||||| |||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
14637 |
tcatgagacagaagctattttcctttccttctttgtttcagatcatattccttttatggggtggattgataaactcactggggcaaatgctcgtgttgac |
14736 |
T |
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| Q |
117 |
aacactttcaaggctttggatgagttttttgaacaagtgcttaaggaacatctcaatcctaataataggaagaaagatgatgaagagaaggatatagttg |
216 |
Q |
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|| |||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
14737 |
aagactttcaaggctttggatgagtttcttgaacaagtccttcaagaacatctcaatcctaataatcggaagaaagatgaagaagagaaggatatagttg |
14836 |
T |
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| Q |
217 |
acgtgttacttgagttaaaaaatcagggtcgtctctcaattgatctcaccaatgataacatcaaagctgtcgttatggtatgttc |
301 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||| |
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| T |
14837 |
acgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaatgatcacatcaaatccgtccttatggtatgttc |
14921 |
T |
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