View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17432_high_13 (Length: 404)
Name: NF17432_high_13
Description: NF17432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17432_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 397
Target Start/End: Complemental strand, 2794272 - 2793893
Alignment:
| Q |
17 |
aatgatacccttccttccatacctatttagaatccttttattcnnnnnnnttagtgtcttttttacgagattaaagaaaagtgattcttaggaaagttga |
116 |
Q |
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|||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2794272 |
aatgatacccttccttccattcctatttagaattcttttattcaaaaaaattagtgtcttttttacgagattaaagaaaagtgattcttaggaaagttga |
2794173 |
T |
|
| Q |
117 |
ttggtctacaatatgagatgatggtcggagtaaatggtgcacgctggaatgtggttgttcatcatcgaagtggagtgactcaagtcaatgagggctcaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2794172 |
ttggtctacaatatgagatgatggtcggagtagatggtgcacgctggaatgtggttgttcatcatcgaagtggagtgactcaagtcaatgagggctcaaa |
2794073 |
T |
|
| Q |
217 |
gagcttagatgnnnnnnnnnncttcataataagtctgtgtacannnnnnnnnactcaagtcagacggtttaagttgctacatagacataatgtcgttagg |
316 |
Q |
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||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2794072 |
gagcttagatgttttttcttttttcagaataagtctgtgtacatttttttttactcaagtcagacggtttaagttgctacataggcataatgtcgttagg |
2793973 |
T |
|
| Q |
317 |
cggttgagcctttctcggcacgtaatccagggcgttgttcaatgatgatcaaagggttcaaatcaattggggtttcttttc |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2793972 |
cggttgagcctttctcggcacgtaatccagggcgttgttcaatgatgatcaaagggttcaaatcaatt-gggtttcttttc |
2793893 |
T |
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