View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17432_high_20 (Length: 291)
Name: NF17432_high_20
Description: NF17432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17432_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 25642679 - 25642602
Alignment:
| Q |
186 |
tgggcggagaatcaatttacagagagaagtttgcagatgagaacttcaagataaagcacactggtccaggtaaatgtt |
263 |
Q |
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| T |
25642679 |
tgggcggagaatcaatttacggagagaagtttgcagatgagaacttcaagctaaagcacactggtccaggtaaatgtt |
25642602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 25642876 - 25642786
Alignment:
| Q |
90 |
aggtgttttcgttcatgttgcaaattgaaatatattaagtcaataatttttcaatttggcttttatttgtatcaaattattaggggaaaag |
180 |
Q |
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| T |
25642876 |
aggtttttgcgttcatcttacaaactggaatatattatgtaaataatttttcatttttgcttttatttgtatcaaattattaggggaaaag |
25642786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 188
Target Start/End: Complemental strand, 25619117 - 25619009
Alignment:
| Q |
80 |
atatactattaggtgttttcgttcatgttgcaaattgaaatatattaagtcaataatttttcaatttggcttttatttgtatc-aaattattaggggaaa |
178 |
Q |
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| T |
25619117 |
atatactattaggtgtttgtgttcatgttacaaattggaatatattatgtaaataa-ttttcaattttgattttatttctatcaaaattattaggttaaa |
25619019 |
T |
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| Q |
179 |
agcggactgg |
188 |
Q |
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| T |
25619018 |
aggggactgg |
25619009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 25619252 - 25619188
Alignment:
| Q |
19 |
agttggcttgtaaatagataagtctacttctgaaaacataattaagtttatgatgtggattatat |
83 |
Q |
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| T |
25619252 |
agttggcttgtaacgagataggtctacttatgaaaacataataaagtttatgatttggattatat |
25619188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 25632843 - 25632780
Alignment:
| Q |
20 |
gttggcttgtaaatagataagtctacttctgaaaacataattaagtttatgatgtggattatat |
83 |
Q |
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| T |
25632843 |
gttggcttgtgactagataggtctacttatgaaaacataaataagtttatcaggtggattatat |
25632780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 25643039 - 25642975
Alignment:
| Q |
19 |
agttggcttgtaaatagataagtctacttctgaaaacataattaagtttatgatgtggattatat |
83 |
Q |
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| T |
25643039 |
agttggcttggaactagataggtctacttgtgaacacatatttaagtttatcaggtggattatat |
25642975 |
T |
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