View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17432_high_25 (Length: 252)
Name: NF17432_high_25
Description: NF17432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17432_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 19486371 - 19486152
Alignment:
| Q |
18 |
aagagaagttagaaggagaaaatggtattatcttaaagaaaatggagtata--ctacttcccaacgccattgtagttgtactagtgaataaaaatcaaaa |
115 |
Q |
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| T |
19486371 |
aagagaagttagaaggagaaaatggtcttatcttaaagaaaatggagtatatactacttcccaacgccattgtagttgtactagtgaataaaaatcaaaa |
19486272 |
T |
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| Q |
116 |
cagaaaaatgtgtcaattaattaattaatgagaggaaaaagttgaacaatgagtttttccatacaaaactgacacaaaagagtgcaccacaattatttct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19486271 |
cagaaaaatgtgtcaattaattaattaatgagaggaaaaagttgaacaatgagtttttccatacaaaactgacacaaaagagtgtaccacaattatttct |
19486172 |
T |
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| Q |
216 |
tcagaggttaaaactgaagt |
235 |
Q |
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||||||||||||||| |||| |
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| T |
19486171 |
tcagaggttaaaacttaagt |
19486152 |
T |
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