View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17432_high_3 (Length: 694)
Name: NF17432_high_3
Description: NF17432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17432_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 107 - 684
Target Start/End: Original strand, 41916145 - 41916726
Alignment:
| Q |
107 |
gttatctacttgtgctttttataaatgtattgttctgcttctcttttcatttgatcacagaagcagcagaacataatttgactttccacacaagtctagt |
206 |
Q |
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| T |
41916145 |
gttatctacttgtgctttttataaatgtattgttctgcttctcttttcatttgatcacagaagcagcagaacataatttgactttccacacaagtctagt |
41916244 |
T |
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| Q |
207 |
tctgtggccaggttaatatttccatttcagatgaagcatacctagtcacatgaaaagctnnnnnnngttatttgttagttttgagatctaggaactggtt |
306 |
Q |
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| T |
41916245 |
tctgtggccaggttaatatttccatttcagatgaagcatacctagtcacatgaaaagctaaaaaaagttgtttgttagttttgagatctaggaactggtt |
41916344 |
T |
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| Q |
307 |
tttctttactctctagagtagagtaactcacattgttttgcgtggaccagaagcaaaacataacaatttattacaaaa-----acaaatattcctgtttc |
401 |
Q |
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| T |
41916345 |
tttctttactctctagagtagagtaactcacattgttttgcgtggaccagaagcaaaacataacaatttattacaaaacaaaaacaaatattcctgtttc |
41916444 |
T |
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| Q |
402 |
tttaacaaagttgattcctttaaactcttttgtatctattagtgtttgtcttcaaccattgttcacatctttgtctttctcattcttctcttttattttt |
501 |
Q |
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| T |
41916445 |
tt-aacaaagttgattcctttaaactcttttgtatctattagtgtttgtcttcaaccattgttcacatctttgtctttctcattcttctcttttgttttt |
41916543 |
T |
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| Q |
502 |
gtcaaaaactactatttcaaatggatcgtttttcttctactactatcccttttgcattacatggagcaaaagatgacctaaccatgcagatttctttgat |
601 |
Q |
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| T |
41916544 |
gtcaaaaactactatttcaaatggatcgtttttcttctactactatcccttttgcattacaaggagcaaaagatgacctaaccatgcagatttctttgat |
41916643 |
T |
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| Q |
602 |
ttggagccaaatcaaagctccattaatcgttccattactaagaatatcagtgtttttgtgtttgataatgtcggtgatgatgt |
684 |
Q |
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| T |
41916644 |
ttggagccaaatcaaagctccattaatcgttccattactaagaatatcagtgtttttgtgtttgataatgtcggtgatgatgt |
41916726 |
T |
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