View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17432_high_31 (Length: 239)
Name: NF17432_high_31
Description: NF17432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17432_high_31 |
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| [»] scaffold0097 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 18953200 - 18953005
Alignment:
| Q |
27 |
tgaggggcactgttaactggttggccattcgaaacgcatgcccatgtaattttgaattgaaatctattactattgaccaatttgtgatcatctcccttga |
126 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18953200 |
tgagtggcactgttaactggttggccattcgaaacgcatgcccatgtaattttgaattgaaatctattactattgaccaatttgtgatcatctcccttga |
18953101 |
T |
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| Q |
127 |
tttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtgacgtctgttgagcccactctatctttcttgatggactccct |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18953100 |
tttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtgacgtctgttgagcccactctatctttcttgatggactccct |
18953005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 18997893 - 18997698
Alignment:
| Q |
27 |
tgaggggcactgttaactggttggccattcgaaacgcatgcccatgtaattttgaattgaaatctattactattgaccaatttgtgatcatctcccttga |
126 |
Q |
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|||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18997893 |
tgagtggcactgttaattggttggccattcgaaacgcgtgcccatgtaattttgaattgaaatctattactattgaccaatttgtgatcatctcccttga |
18997794 |
T |
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| Q |
127 |
tttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtgacgtctgttgagcccactctatctttcttgatggactccct |
222 |
Q |
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| T |
18997793 |
tttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtgacgtctgttgagcccactctatctttcttgatggactccct |
18997698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 18983247 - 18983052
Alignment:
| Q |
27 |
tgaggggcactgttaactggttggccattcgaaacgcatgcccatgtaattttgaattgaaatctattactattgaccaatttgtgatcatctcccttga |
126 |
Q |
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|||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18983247 |
tgagtggcactgttaactggttggccattcgaaacgcgtgtccatgtaattttgaattgaaatctattactattgaccaattcgtgatcatctcccttga |
18983148 |
T |
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| Q |
127 |
tttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtgacgtctgttgagcccactctatctttcttgatggactccct |
222 |
Q |
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| T |
18983147 |
tttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtgacgtctgttgagcccaccctatctttcttgatggactccct |
18983052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 19597881 - 19597826
Alignment:
| Q |
95 |
actattgaccaatttgtgatcatctcccttgatttgaggacggagacatacaatca |
150 |
Q |
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| T |
19597881 |
actattgaccaatttgtgatcatcttgcttgatttgattacggagacataccatca |
19597826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 194
Target Start/End: Complemental strand, 19604678 - 19604591
Alignment:
| Q |
107 |
tttgtgatcatctcccttgatttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtgacgtctgttgagc |
194 |
Q |
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| T |
19604678 |
tttgttatcatctcccttgatttgagtactgagacataccgtcaacttcgtctgcctcgtggttttgataaagtgccacctgttgagc |
19604591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 177
Target Start/End: Original strand, 29881095 - 29881181
Alignment:
| Q |
91 |
tattactattgaccaatttgtgatcatctcccttgatttgaggacggagacatacaatcaatttctactccctcttggttttgatga |
177 |
Q |
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| T |
29881095 |
tattactgttgaccaatttgttattgtttcacttgatttggggactgagacatacaatcaatatcgactgcctccgagttttgatga |
29881181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 19374529 - 19374574
Alignment:
| Q |
14 |
aaaggagcgtagttgaggggcactgttaactggttggccattcgaa |
59 |
Q |
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| T |
19374529 |
aaaggagtgtatttgagcggcactgttaactggtttgccattcgaa |
19374574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 16597 - 16548
Alignment:
| Q |
97 |
tattgaccaatttgtgatcatctcccttgatttgaggacggagacataca |
146 |
Q |
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|||||| |||||||||||||||||||| |||||| ||| ||||||||||| |
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| T |
16597 |
tattgaacaatttgtgatcatctccctcgatttggggatggagacataca |
16548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 20712758 - 20712709
Alignment:
| Q |
97 |
tattgaccaatttgtgatcatctcccttgatttgaggacggagacataca |
146 |
Q |
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|||||| |||||||||||||||||||| |||||| ||| ||||||||||| |
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| T |
20712758 |
tattgaacaatttgtgatcatctccctcgatttggggatggagacataca |
20712709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 20967541 - 20967594
Alignment:
| Q |
93 |
ttactattgaccaatttgtgatcatctcccttgatttgaggacggagacataca |
146 |
Q |
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||||| |||| |||||||||||||| |||||||||||| |||| ||||| |||| |
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| T |
20967541 |
ttactgttgagcaatttgtgatcatttcccttgatttggggacagagacctaca |
20967594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 24331130 - 24331069
Alignment:
| Q |
91 |
tattactattgaccaatttgtgatcatctcccttgatttgaggacggagacatacaatcaat |
152 |
Q |
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||||||| ||||||| |||||||| | || ||||||||| |||||||||||||||||||| |
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| T |
24331130 |
tattactgttgaccagtttgtgattgtttctcttgatttggagacggagacatacaatcaat |
24331069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 21855614 - 21855553
Alignment:
| Q |
91 |
tattactattgaccaatttgtgatcatctcccttgatttgaggacggagacatacaatcaat |
152 |
Q |
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||||||| ||||||| |||||||| | || ||||||||| |||||||||||||||||||| |
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| T |
21855614 |
tattactgttgaccagtttgtgattgtttctcttgatttggagacggagacatacaatcaat |
21855553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 20770502 - 20770562
Alignment:
| Q |
104 |
caatttgtgatcatctcccttgatttgaggacggagacatacaatcaatttctactccctc |
164 |
Q |
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||||||||||||||||||||||||||| || ||||||||||| || || ||||||||| |
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| T |
20770502 |
caatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctc |
20770562 |
T |
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