View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17432_high_6 (Length: 590)
Name: NF17432_high_6
Description: NF17432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17432_high_6 |
 |  |
|
| [»] scaffold0273 (2 HSPs) |
 |  |  |
|
Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-135; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 20924324 - 20923843
Alignment:
| Q |
1 |
tcatttggcggctgtnnnnnnncatcctacctacaagagcaaatttgtgcaagaaaggaattaaaattgaaccgttatgcccaatgtgcaattctgccac |
100 |
Q |
| |
|
||||||||||||||| |||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20924324 |
tcatttggcggctgtcaaaaaacatcatacccacaagagcaaatatgtgcaagaaaggaattaaaattgaaccgttatgcccaatgtgtaattctgccac |
20924225 |
T |
 |
| Q |
101 |
tgaaacaattcaacatcttttcatggaatgtaatttttccaagcttacatggttctcatctagccttgggatccat-tgccttcaacacttgatttaaat |
199 |
Q |
| |
|
||| ||||||||| |||| |||||||| |||||||||||||||||||| ||||||| ||||||||| ||||||||| | ||||||| || | |||||| |
|
|
| T |
20924224 |
tgagacaattcaagatctcttcatggattgtaatttttccaagcttacctggttcttatctagcctcgggatccatgttccttcaaacctcgctttaaac |
20924125 |
T |
 |
| Q |
200 |
agttggctgttaggttggttggaaaagaaagatatgttaggttcacaattattttgcactactatgtggaaaatgtggttttatagaaatcaagtggtgt |
299 |
Q |
| |
|
| ||||||| || |||||||||||||||||||||| | |||||||||||||||||||||| | | ||||||||||||||||||||||| |||||||||| |
|
|
| T |
20924124 |
aattggctgctaatttggttggaaaagaaagatatgctcggttcacaattattttgcactaatctttggaaaatgtggttttatagaaaccaagtggtgt |
20924025 |
T |
 |
| Q |
300 |
tcaatcagatcagtccctacccccctgatgtcgctaatgcagcactatattttattgttgaatttaatcacaccatgcaaaagaagcgaaatcagttgca |
399 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| |
|
|
| T |
20924024 |
ttaatcagatcagtcccta-ccccctgatgtcgctaatgcagcgttatattttattgttgaatttaatcacaccatgccaaagaagcggagtcagttgca |
20923926 |
T |
 |
| Q |
400 |
ggcgcacggtgtagcagcagttgcagccgctcctagtcttgtatgtaatgctcatgttattaaggttgatgcaggttgttttccggaaggtttca |
494 |
Q |
| |
|
| | ||| |||| |||||||| |||||| | |||||||||||| ||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
20923925 |
gccacac------------attgcggccgctccgagtcttatctgtaatgctcatattattcaggttgatgcaggttgttttccgcaaggtttca |
20923843 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 38263807 - 38264087
Alignment:
| Q |
1 |
tcatttggcggctgtnnnnnnncatcctacctacaagagcaaatttgtgcaagaaaggaattaaaattgaaccgttatgcccaatgtgcaattctgccac |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38263807 |
tcatttggcggctgtaaaaaaacatcctacctacaagagcaaatttgtgcaagaaaggaattaaaattgaaccgttatgcccaatgtgcaattctgccac |
38263906 |
T |
 |
| Q |
101 |
tgaaacaattcaacatcttttcatggaatgtaatttttccaagcttacatggttctcatctagccttgggatccat-tgccttcaacacttgatttaaat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38263907 |
tgaaacaattcaacatcttttcatggaatgtaatttt---aagcttacatggttctcatctagccttgggatccatgtgccttcaacacttgatttaaat |
38264003 |
T |
 |
| Q |
200 |
agttggctgttaggttggttggaaaagaaagatatgttaggttcacaattattttgcactactatgtggaaaatgtggttttat |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38264004 |
agttggctgttaggttggttggaaaagaaagatatgttaggttcacaattattttgcactactatgtggaaaatgtggttttat |
38264087 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 8709367 - 8709014
Alignment:
| Q |
1 |
tcatttggcggctgtnnnnnnncatcctacctacaagagcaaatttgtgcaagaaaggaattaaaattgaaccgttatgcccaatgtgcaattctgccac |
100 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
8709367 |
tcatttggcggctgtcaaaaaacatcctacccacaagagcaaatttgtgcaagaaaggaattaaaattgaacaattatgcccaatgtgtaattctgccac |
8709268 |
T |
 |
| Q |
101 |
tgaaacaattcaacatcttttcatggaatgtaatttttccaagcttacatggttctcatctagccttgggatccat-tgccttcaacacttgatttaaat |
199 |
Q |
| |
|
||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| || | |||||| |
|
|
| T |
8709267 |
tgagacaattcaacatcttttcatggattataatttttccaagcttacatggttctcatctagcctcgggatccatgttccttcaaacctcgctttaaac |
8709168 |
T |
 |
| Q |
200 |
agttggctgttaggttggttggaaaagaaagatatgttaggttcacaattattttgcactactatgtggaaaatgtggttttatagaaatcaagtggtgt |
299 |
Q |
| |
|
||||||||| || |||||| ||||||||||||||| | |||||||||||||| ||||||| | | ||||||||||||||||||||||| ||||| |||| |
|
|
| T |
8709167 |
agttggctgctaatttggtttgaaaagaaagatatgctcggttcacaattattctgcactattctttggaaaatgtggttttatagaaaccaagtagtgt |
8709068 |
T |
 |
| Q |
300 |
tcaatcagatcagtccctacccccctgatgtcgctaatgcagcactatattttat |
354 |
Q |
| |
|
| |||||||||||| | | |||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
8709067 |
ttaatcagatcagt-ctttcccccctgatgtcgctaatgcagcgctagattttat |
8709014 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 443 - 574
Target Start/End: Complemental strand, 8709012 - 8708881
Alignment:
| Q |
443 |
tgtaatgctcatgttattaaggttgatgcaggttgttttccggaaggtttcaccacgtttggctgcgtttttaaggatgttccagatagtgtctatttct |
542 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||| |
|
|
| T |
8709012 |
tgtaatgctcatattattcaggttgatgcatgttgttttccgcaaggtttcaccacgtttggctgcgttttcaaggatggtccaaatagtgtatatttct |
8708913 |
T |
 |
| Q |
543 |
cagcctgcaagaaggaggaagtgagtactgaa |
574 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |
|
|
| T |
8708912 |
cagtctgcaagaaggaggaagtgagtactgaa |
8708881 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 445 - 561
Target Start/End: Original strand, 29847814 - 29847930
Alignment:
| Q |
445 |
taatgctcatgttattaaggttgatgcaggttgttttccggaaggtttcaccacgtttggctgcgtttttaaggatgttccagatagtgtctatttctca |
544 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||| || || || ||||| | ||||||||| ||||||| || ||||||| | | | ||||||| |
|
|
| T |
29847814 |
taatgctcatattatccaggttgatgcaggttgttttccagagggatttaccacttatggctgcgtgtttaaggctgatccagatgatatatttttctca |
29847913 |
T |
 |
| Q |
545 |
gcctgcaagaaggagga |
561 |
Q |
| |
|
|| |||||||| ||||| |
|
|
| T |
29847914 |
gcttgcaagaaagagga |
29847930 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0273 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: scaffold0273
Description:
Target: scaffold0273; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 144 - 574
Target Start/End: Original strand, 20675 - 21094
Alignment:
| Q |
144 |
cttacatggttctcatctagccttgggatccat-tgccttcaacacttgatttaaatagttggctgttaggttggttggaaaagaaagatatgttaggtt |
242 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||| | ||||||| || | |||||| |||||| || || |||||||||||||||||||||| | |||| |
|
|
| T |
20675 |
cttacacggttctcatctagcctcgggatccatgttccttcaaacctcgctttaaacagttggttgctaatttggttggaaaagaaagatatgctcggtt |
20774 |
T |
 |
| Q |
243 |
cacaattattttgcactactatgtggaaaatgtggttttatagaaatcaagtggtgttcaatcagatcagtccctacccccctgatgtcgctaatgcagc |
342 |
Q |
| |
|
|||||||||| | ||||| | | ||||||||||||||||||||||| ||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
20775 |
cacaattattctacactattctttggaaaatgtggttttatagaaaccaagtggtgtttaatcaaatccgtccctaccaccctgatgtcgctaatgcagc |
20874 |
T |
 |
| Q |
343 |
actatattttattgttgaatttaatcacaccatgcaaaagaagcgaaatcagttgcaggcgcacggtgtagcagcagttgcagccgctcctagtcttgta |
442 |
Q |
| |
|
||| ||||||||||||||||||||| |||| ||| ||||||| | | |||||||||| | ||| ||||||||||||| |||||| | |
|
|
| T |
20875 |
gctagattttattgttgaatttaatcgcaccgtgccaaagaaggggagtcagttgcagccacac------------attgcagccgctccgagtcttatt |
20962 |
T |
 |
| Q |
443 |
tgtaatgctcatgttattaaggttgatgcaggttgttttccggaaggtttcaccacgtttggctgcgtttttaaggatgttccagatagtgtctatttct |
542 |
Q |
| |
|
|||||||||||| ||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
20963 |
tgtaatgctcatattattctagttgatgcaagttgttttccgcaaggtttcaccacgtttggctgcgttttcaaggatggtccagatagtgtatatttct |
21062 |
T |
 |
| Q |
543 |
cagcctgcaagaaggaggaagtgagtactgaa |
574 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |
|
|
| T |
21063 |
cagcctacaagaaggaggaagtgagtactgaa |
21094 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0273; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 19361 - 19508
Alignment:
| Q |
1 |
tcatttggcggctgtnnnnnnncatcctacctacaagagcaaatttgtgcaagaaaggaattaaaattgaaccgttatgcccaatgtgcaattctgccac |
100 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||| | | |||| ||||||||||| |
|
|
| T |
19361 |
tcatttggcggctgtctaaaagcatcctacccacaagagaaaatatgtgcaagaaaggaattaaaattgaaccgttatggctattgtgtaattctgccac |
19460 |
T |
 |
| Q |
101 |
tgaaacaattcaacatcttttcatggaatgtaatttttccaagcttac |
148 |
Q |
| |
|
| | ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19461 |
taagacaattcaacatcttttcatggattgtaatttttccaagcttac |
19508 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 465 - 574
Target Start/End: Complemental strand, 4170046 - 4169937
Alignment:
| Q |
465 |
ttgatgcaggttgttttccggaaggtttcaccacgtttggctgcgtttttaaggatgttccagatagtgtctatttctcagcctgcaagaaggaggaagt |
564 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4170046 |
ttgatgcaggttgttttctgcaaggtttcaccacgtttggctgcgttttcaaggatggtccatatagtgtatatttctcagcctgcaagaaggaggaagt |
4169947 |
T |
 |
| Q |
565 |
gagtactgaa |
574 |
Q |
| |
|
|||||||||| |
|
|
| T |
4169946 |
gagtactgaa |
4169937 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 23 - 369
Target Start/End: Original strand, 40050138 - 40050485
Alignment:
| Q |
23 |
catcctacctacaagagcaaatttgtgcaagaaaggaattaaaattgaaccgttatgcccaatgtgcaattctgccactgaaacaattcaacatcttttc |
122 |
Q |
| |
|
||||||||| || |||| ||| |||| || ||||| |||||||||| || ||||| || ||||||||||||| ||||||||| |||| || || ||| |
|
|
| T |
40050138 |
catcctacccaccagaggaaacttgtttaaaaaaggggttaaaattgagcctttatgtccgatgtgcaattctgaaactgaaacagttcaccacctcttc |
40050237 |
T |
 |
| Q |
123 |
atggaatgtaatttttccaagcttacatggttctcatctagccttgggatccattgccttcaacacttgatt-taaatagttggctgttaggttggttgg |
221 |
Q |
| |
|
|||||||| |||||| | ||| | |||||||||||||||||||| |||||| || ||||| | | | ||| ||||| ||| |||||| | |
|
|
| T |
40050238 |
atggaatgcaattttgctaagttagtttggttctcatctagccttggcatccatgtcccgttacactcctctcttagtagctggcttttaaattggttag |
40050337 |
T |
 |
| Q |
222 |
aaaagaaagatatgttaggttcacaattattttgcactactatgtggaaaatgtggttttatagaaatcaagtggtgttcaatcagatcagtccctaccc |
321 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||||||||| | |||||||||||||||||||||| |||||| |||||||||| | | | | ||| || |
|
|
| T |
40050338 |
aaaagaaagataaattaggctcacagttattttgcactattttgtggaaaatgtggttttataggaatcaaatggtgttcaaaatggttaatacctttcc |
40050437 |
T |
 |
| Q |
322 |
ccctgatgtcgctaatgcagcactatattttattgttgaatttaatca |
369 |
Q |
| |
|
||||||||| |||| ||| ||||| ||||| ||||||| |||||||| |
|
|
| T |
40050438 |
ccctgatgttgctactgctgcacttgattttgttgttgattttaatca |
40050485 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 303
Target Start/End: Complemental strand, 35649669 - 35649580
Alignment:
| Q |
214 |
ttggttggaaaagaaagatatgttaggttcacaattattttgcactactatgtggaaaatgtggttttatagaaatcaagtggtgttcaa |
303 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||||| ||||||||||||| | |||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
35649669 |
ttggttagaaaagaaagataaattaggctcacagttattttgcactattttgtggaaaatgtggttttattggaatcaaatggtgttcaa |
35649580 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 446 - 561
Target Start/End: Original strand, 40050550 - 40050665
Alignment:
| Q |
446 |
aatgctcatgttattaaggttgatgcaggttgttttccggaaggtttcaccacgtttggctgcgtttttaaggatgttccagatagtgtctatttctcag |
545 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||| || | |||||| | ||||||||| ||||||| || |||||||| | | |||||||| |
|
|
| T |
40050550 |
aatgctcatattatccaggttgatgcaggttgttttccggagggatacaccacttatggctgcgtgtttaaggctgctccagataacatttttttctcag |
40050649 |
T |
 |
| Q |
546 |
cctgcaagaaggagga |
561 |
Q |
| |
|
| |||||||| ||||| |
|
|
| T |
40050650 |
cttgcaagaaagagga |
40050665 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 420 - 561
Target Start/End: Complemental strand, 35637509 - 35637368
Alignment:
| Q |
420 |
ttgcagccgctcctagtcttgtatgtaatgctcatgttattaaggttgatgcaggttgttttccggaaggtttcaccacgtttggctgcgtttttaagga |
519 |
Q |
| |
|
||||||| |||||||||| ||| ||||||||| |||| ||||||||||||||||||||||||| || | | |||| | ||||||||| |||||| |
|
|
| T |
35637509 |
ttgcagctgctcctagtcctgttcagaatgctcatattatccaggttgatgcaggttgttttccggagggatacgccacttatggctgcgtgtttaagac |
35637410 |
T |
 |
| Q |
520 |
tgttccagatagtgtctatttctcagcctgcaagaaggagga |
561 |
Q |
| |
|
|| |||||||| | | ||||||||| |||||||| ||||| |
|
|
| T |
35637409 |
tgctccagataacatttttttctcagcttgcaagaaagagga |
35637368 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 521
Target Start/End: Original strand, 13181339 - 13181396
Alignment:
| Q |
464 |
gttgatgcaggttgttttccggaaggtttcaccacgtttggctgcgtttttaaggatg |
521 |
Q |
| |
|
||||||||||||||||| || | ||||||||||| ||||| || ||||||||||||| |
|
|
| T |
13181339 |
gttgatgcaggttgtttcccatatggtttcaccacttttggatgtgtttttaaggatg |
13181396 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 214 - 369
Target Start/End: Complemental strand, 41268056 - 41267901
Alignment:
| Q |
214 |
ttggttggaaaagaaagatatgttaggttcacaattattttgcactactatgtggaaaatgtggttttatagaaatcaagtggtgttcaatcagatcagt |
313 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||||| ||||||||||||| | |||||||||||||||||||||| |||||| |||||||||| | | | | |
|
|
| T |
41268056 |
ttggttagaaaagaaagataaattaggctcacagttattttgcactattttgtggaaaatgtggttttataggaatcaaatggtgttcaaaatggttaat |
41267957 |
T |
 |
| Q |
314 |
ccctacccccctgatgtcgctaatgcagcactatattttattgttgaatttaatca |
369 |
Q |
| |
|
||| ||||||||||| |||| ||| ||||| ||||| ||||||| |||||||| |
|
|
| T |
41267956 |
acctttccccctgatgttgctactgctgcacttgattttgttgttgattttaatca |
41267901 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 446 - 561
Target Start/End: Complemental strand, 41267836 - 41267721
Alignment:
| Q |
446 |
aatgctcatgttattaaggttgatgcaggttgttttccggaaggtttcaccacgtttggctgcgtttttaaggatgttccagatagtgtctatttctcag |
545 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||| || | |||||| | ||||||||| ||||||| || |||||||| | | |||||||| |
|
|
| T |
41267836 |
aatgctcatattatccaggttgatgcaggttgttttccggagggatacaccacttatggctgcgtgtttaaggctgctccagataacatttttttctcag |
41267737 |
T |
 |
| Q |
546 |
cctgcaagaaggagga |
561 |
Q |
| |
|
| |||||||| ||||| |
|
|
| T |
41267736 |
cgtgcaagaaagagga |
41267721 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 41271081 - 41270928
Alignment:
| Q |
23 |
catcctacctacaagagcaaatttgtgcaagaaaggaattaaaattgaaccgttatgcccaatgtgcaattctgccactgaaacaattcaacatcttttc |
122 |
Q |
| |
|
||||||||| || |||| ||| |||| || ||||| |||||||||| || ||||| || ||||||||||||| ||||||||| ||| || || ||| |
|
|
| T |
41271081 |
catcctacccaccagaggaaacttgtttaaaaaaggggttaaaattgagcctttatgtccgatgtgcaattctgaaactgaaacagctcaccacctcttc |
41270982 |
T |
 |
| Q |
123 |
atggaatgtaatttttccaagcttacatggttctcatctagccttgggatccat |
176 |
Q |
| |
|
|||||||| |||||| | ||| | |||||||||||||||||||| |||||| |
|
|
| T |
41270981 |
atggaatgcaattttgctaagttagtttggttctcatctagccttggcatccat |
41270928 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 302
Target Start/End: Complemental strand, 48307206 - 48307119
Alignment:
| Q |
214 |
ttggttggaaaagaaagatatgttaggttcacaattattttgcactactatgtggaaaatgtggttttatagaaatcaagtggtgttca |
302 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||||| |||||||||| || | |||| |||||||||||||||| |||||| ||||||||| |
|
|
| T |
48307206 |
ttggttagaaaagaaagataaattaggctcacagttattttgca-tattttgtgaaaaatgtggttttataagaatcaaatggtgttca |
48307119 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 446 - 561
Target Start/End: Complemental strand, 14463045 - 14462930
Alignment:
| Q |
446 |
aatgctcatgttattaaggttgatgcaggttgttttccggaaggtttcaccacgtttggctgcgtttttaaggatgttccagatagtgtctatttctcag |
545 |
Q |
| |
|
||||||||| |||| |||||||||||||||| ||||||||||| | |||||| | ||| ||||| ||||||| || |||||||| | | |||||||| |
|
|
| T |
14463045 |
aatgctcatattatccaggttgatgcaggttgctttccggaaggatacaccacttatggttgcgtgtttaaggctgctccagataacatttttttctcag |
14462946 |
T |
 |
| Q |
546 |
cctgcaagaaggagga |
561 |
Q |
| |
|
| |||||||| ||||| |
|
|
| T |
14462945 |
cttgcaagaaagagga |
14462930 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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