View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17432_high_8 (Length: 503)

Name: NF17432_high_8
Description: NF17432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17432_high_8
NF17432_high_8
[»] chr8 (5 HSPs)
chr8 (39-482)||(24866954-24867398)
chr8 (425-481)||(28280735-28280791)
chr8 (429-481)||(14724969-14725021)
chr8 (426-477)||(2669675-2669726)
chr8 (426-468)||(2563385-2563427)
[»] chr4 (4 HSPs)
chr4 (425-486)||(26206353-26206414)
chr4 (416-468)||(39932771-39932823)
chr4 (425-478)||(19725319-19725372)
chr4 (416-468)||(896987-897039)
[»] chr3 (7 HSPs)
chr3 (425-482)||(28741217-28741274)
chr3 (425-481)||(10448800-10448856)
chr3 (426-482)||(30473146-30473202)
chr3 (426-482)||(37243493-37243549)
chr3 (425-470)||(34707728-34707773)
chr3 (426-466)||(43376722-43376762)
chr3 (425-469)||(53787768-53787812)
[»] chr5 (6 HSPs)
chr5 (425-481)||(43319029-43319085)
chr5 (425-480)||(28357378-28357433)
chr5 (425-482)||(23087782-23087839)
chr5 (425-482)||(29659086-29659143)
chr5 (425-482)||(29418755-29418812)
chr5 (425-478)||(38461289-38461342)
[»] chr7 (6 HSPs)
chr7 (426-482)||(47654417-47654473)
chr7 (425-482)||(22032788-22032845)
chr7 (429-466)||(30094750-30094787)
chr7 (425-480)||(43818884-43818939)
chr7 (426-468)||(35809117-35809159)
chr7 (425-478)||(29378671-29378724)
[»] chr6 (6 HSPs)
chr6 (425-481)||(6632685-6632741)
chr6 (425-469)||(10730257-10730301)
chr6 (425-468)||(34413345-34413388)
chr6 (425-466)||(21610068-21610109)
chr6 (416-469)||(29052350-29052403)
chr6 (429-477)||(29623485-29623533)
[»] chr1 (11 HSPs)
chr1 (425-478)||(41196717-41196770)
chr1 (429-470)||(49971281-49971322)
chr1 (425-468)||(26542999-26543042)
chr1 (425-467)||(15631930-15631972)
chr1 (425-486)||(4068141-4068202)
chr1 (425-478)||(6337763-6337816)
chr1 (426-478)||(3069861-3069913)
chr1 (425-481)||(5610534-5610590)
chr1 (429-465)||(12256637-12256673)
chr1 (425-477)||(18327550-18327602)
chr1 (426-478)||(48819326-48819378)
[»] chr2 (7 HSPs)
chr2 (425-471)||(33321417-33321463)
chr2 (425-462)||(8441499-8441536)
chr2 (425-478)||(11777010-11777063)
chr2 (426-467)||(12238501-12238542)
chr2 (425-462)||(35515503-35515540)
chr2 (425-478)||(36501522-36501575)
chr2 (429-477)||(16108130-16108178)


Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 39 - 482
Target Start/End: Complemental strand, 24867398 - 24866954
Alignment:
Q  39 aagatgccctattcccttgcctaattaaaactaaaatcacagcattcaaaaaccatttgagtttgattaagctaggactggaaagaaatttaatattcgt 138  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24867398 aagatgccctattcccttgcctaattaaaactaaaatcatagcattcaaaaaccatttgagtttgattaagctaggactggaaagaaatttaatattcgt 24867299  T
Q  139 aaaaatcatttcgtagagtgtatatattcatgttggccctttaaagatattctgtttatcaatgacaacaaagtgattcttcaattatgattaatgacat 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  24867298 aaaaatcatttcgtagagtgtatatattcatgttggccctttaaagatattctgtttatcaatgacaacaaattgattattcaattatgattaatgacat 24867199  T
Q  239 caattaattccttgcagtaccaatttgatgacaaaagtgtaacatttaaagaaatttgatatcacacatatatttggactttggaggattgtatcaacat 338  Q
    ||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24867198 caattaattcct------------------acaaaagtgtaacatttaaagaaatttgatatcacacatatatttggactttggaggatcgtatcaacat 24867117  T
Q  339 gtt-------------------tataatgtaatgtctaactttggatgaccaaattgaatgtatactcctaaactgcataaaagatatttatttgcataa 419  Q
    |||                   |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24867116 gtttataaatggagtatcagtatataatgtcatgtctaaatttggatgaccaaattgaatgtatactcctaaactgcataaaagatatttatttgcataa 24867017  T
Q  420 actgctatgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaaggtac 482  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  24867016 actgctatgtattatttataagattgttaatgtagtttatgaaaaaacagcttatgaaggtac 24866954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 425 - 481
Target Start/End: Original strand, 28280735 - 28280791
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaaggta 481  Q
    ||||||||| ||||||| ||||||||||||||||||||||||| |  ||||||||||    
T  28280735 tatgtattatttataagtttgttaatgtagtttatgaaaaaactgtttatgaaggta 28280791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 481
Target Start/End: Complemental strand, 14725021 - 14724969
Alignment:
Q  429 tattacttataagattgttaatgtagtttatgaaaaaacagcatatgaaggta 481  Q
    ||||| ||||||||||||||||||| |||||||||||||| | |||| |||||    
T  14725021 tattatttataagattgttaatgtaatttatgaaaaaacaacttatgtaggta 14724969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 477
Target Start/End: Original strand, 2669675 - 2669726
Alignment:
Q  426 atgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaa 477  Q
    |||||||| ||||||| ||||||| |||||||||||||||||| | ||||||    
T  2669675 atgtattatttataagtttgttaaggtagtttatgaaaaaacaacttatgaa 2669726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 468
Target Start/End: Original strand, 2563385 - 2563427
Alignment:
Q  426 atgtattacttataagattgttaatgtagtttatgaaaaaaca 468  Q
    |||||||| ||||||| ||||||| ||||||||||||||||||    
T  2563385 atgtattatttataagtttgttaaagtagtttatgaaaaaaca 2563427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 425 - 486
Target Start/End: Complemental strand, 26206414 - 26206353
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaaggtactatt 486  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||  |||||| ||||||||    
T  26206414 tatgtattatttataagattgttaacgtagtttatgaaaaaacagtttatgaatgtactatt 26206353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 468
Target Start/End: Complemental strand, 39932823 - 39932771
Alignment:
Q  416 ataaactgctatgtattacttataagattgttaatgtagtttatgaaaaaaca 468  Q
    |||||||  ||||||||| ||||||||||||||| ||||| ||||||||||||    
T  39932823 ataaacttttatgtattatttataagattgttaaggtagtgtatgaaaaaaca 39932771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 478
Target Start/End: Original strand, 19725319 - 19725372
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaag 478  Q
    ||||||||| ||||||| ||||||| ||| |||||||||||||||  |||||||    
T  19725319 tatgtattatttataagtttgttaaggtattttatgaaaaaacagtctatgaag 19725372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 468
Target Start/End: Original strand, 896987 - 897039
Alignment:
Q  416 ataaactgctatgtattacttataagattgttaatgtagtttatgaaaaaaca 468  Q
    |||||||  ||||||||| | ||||| |||| |||||||||||||||||||||    
T  896987 ataaacttttatgtattattcataagcttgtcaatgtagtttatgaaaaaaca 897039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 425 - 482
Target Start/End: Complemental strand, 28741274 - 28741217
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaaggtac 482  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||  |||||||||||    
T  28741274 tatgtattacttataagcttgttaaagtagtttatgaaaaaacagattatgaaggtac 28741217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 425 - 481
Target Start/End: Original strand, 10448800 - 10448856
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaaggta 481  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||  ||||||||||    
T  10448800 tatgtattatttataagcttgttaatgtagtttatgaaaaaacagtttatgaaggta 10448856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 30473202 - 30473146
Alignment:
Q  426 atgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaaggtac 482  Q
    |||||||| ||||||| ||||||| |||||||||||||||||| | |||||| ||||    
T  30473202 atgtattatttataaggttgttaaggtagtttatgaaaaaacaacttatgaatgtac 30473146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 37243493 - 37243549
Alignment:
Q  426 atgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaaggtac 482  Q
    |||||||| ||||||| ||||||| |||||||||||||||| ||  |||||||||||    
T  37243493 atgtattatttataagcttgttaacgtagtttatgaaaaaatagtttatgaaggtac 37243549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 470
Target Start/End: Complemental strand, 34707773 - 34707728
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacagc 470  Q
    ||||||||| | ||||| ||||||| ||||||||||||||||||||    
T  34707773 tatgtattattcataagcttgttaaggtagtttatgaaaaaacagc 34707728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 466
Target Start/End: Original strand, 43376722 - 43376762
Alignment:
Q  426 atgtattacttataagattgttaatgtagtttatgaaaaaa 466  Q
    |||||||| ||||||| ||||||||||||||||||| ||||    
T  43376722 atgtattatttataagcttgttaatgtagtttatgataaaa 43376762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 469
Target Start/End: Complemental strand, 53787812 - 53787768
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacag 469  Q
    ||||||||||||||||| || ||||| ||||||| ||||||||||    
T  53787812 tatgtattacttataagctttttaatatagtttacgaaaaaacag 53787768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 425 - 481
Target Start/End: Original strand, 43319029 - 43319085
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaaggta 481  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||  ||||||||||    
T  43319029 tatgtattatttataagcttgttaatgtagtttatgaaaaaacagtttatgaaggta 43319085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 480
Target Start/End: Original strand, 28357378 - 28357433
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaaggt 480  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||  |||||||||    
T  28357378 tatgtattatttataagtttgttaatgtagtttatgaaaaaacagtttatgaaggt 28357433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 482
Target Start/End: Complemental strand, 23087839 - 23087782
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaaggtac 482  Q
    ||||||||| ||||||| |||||||| ||||||||||||||||| |  ||||||||||    
T  23087839 tatgtattatttataagcttgttaatatagtttatgaaaaaacaactcatgaaggtac 23087782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 482
Target Start/End: Original strand, 29659086 - 29659143
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaaggtac 482  Q
    ||||||||| ||||||| |||||||||||||||| ||||||||||  |||||| ||||    
T  29659086 tatgtattatttataagcttgttaatgtagtttaagaaaaaacagtttatgaaagtac 29659143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 482
Target Start/End: Complemental strand, 29418812 - 29418755
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaaggtac 482  Q
    ||||||||| |||||||  || ||||||||||||||||||||||   |||||||||||    
T  29418812 tatgtattatttataagcatgctaatgtagtttatgaaaaaacaatttatgaaggtac 29418755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 478
Target Start/End: Complemental strand, 38461342 - 38461289
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaag 478  Q
    ||||||||| ||||||| |||| |||||| |||||||||||||||  |||||||    
T  38461342 tatgtattatttataagtttgtaaatgtattttatgaaaaaacagtttatgaag 38461289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 47654473 - 47654417
Alignment:
Q  426 atgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaaggtac 482  Q
    ||||||||  |||||| |||||||||||||||||||||||||||  |||||||||||    
T  47654473 atgtattatatataagcttgttaatgtagtttatgaaaaaacagtttatgaaggtac 47654417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 482
Target Start/End: Original strand, 22032788 - 22032845
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaaggtac 482  Q
    ||||||||| |||||||  |||||||||||||||||||||||||   |||||||||||    
T  22032788 tatgtattatttataagcatgttaatgtagtttatgaaaaaacaatttatgaaggtac 22032845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 30094787 - 30094750
Alignment:
Q  429 tattacttataagattgttaatgtagtttatgaaaaaa 466  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  30094787 tattatttataagattgttaatgtagtttatgaaaaaa 30094750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 480
Target Start/End: Complemental strand, 43818939 - 43818884
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaaggt 480  Q
    ||||||||| ||||||| ||||||||||  |||||||||||||||  |||||||||    
T  43818939 tatgtattatttataagcttgttaatgttatttatgaaaaaacagtttatgaaggt 43818884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 468
Target Start/End: Original strand, 35809117 - 35809159
Alignment:
Q  426 atgtattacttataagattgttaatgtagtttatgaaaaaaca 468  Q
    |||||||| ||||||| ||||||| ||||||||||||||||||    
T  35809117 atgtattatttataagcttgttaacgtagtttatgaaaaaaca 35809159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 478
Target Start/End: Original strand, 29378671 - 29378724
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaag 478  Q
    ||||||||| |||| || |||| || |||||||||||||||||||| |||||||    
T  29378671 tatgtattatttatgagtttgtcaaggtagtttatgaaaaaacagcttatgaag 29378724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 425 - 481
Target Start/End: Original strand, 6632685 - 6632741
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaaggta 481  Q
    ||||||||| ||||||  |||||||||||||||||||||||||| | ||||||||||    
T  6632685 tatgtattatttataaacttgttaatgtagtttatgaaaaaacaacttatgaaggta 6632741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 469
Target Start/End: Complemental strand, 10730301 - 10730257
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacag 469  Q
    ||||||||| ||||||  |||||||||||||||||||||||||||    
T  10730301 tatgtattatttataaacttgttaatgtagtttatgaaaaaacag 10730257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 468
Target Start/End: Original strand, 34413345 - 34413388
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaaca 468  Q
    ||||||||| ||||||| |||| |||||||||||||||||||||    
T  34413345 tatgtattatttataagtttgtaaatgtagtttatgaaaaaaca 34413388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 466
Target Start/End: Complemental strand, 21610109 - 21610068
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaa 466  Q
    |||| |||| ||||||| ||||||||||||||||||||||||    
T  21610109 tatgaattatttataagcttgttaatgtagtttatgaaaaaa 21610068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 469
Target Start/End: Original strand, 29052350 - 29052403
Alignment:
Q  416 ataaactgctatgtattacttataagattgttaatgtagtttatgaaaaaacag 469  Q
    |||||||  ||||||||| ||||||| ||||||| ||| |||||||||||||||    
T  29052350 ataaacttttatgtattatttataagtttgttaaggtattttatgaaaaaacag 29052403  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 477
Target Start/End: Complemental strand, 29623533 - 29623485
Alignment:
Q  429 tattacttataagattgttaatgtagtttatgaaaaaacagcatatgaa 477  Q
    ||||| |||| || |||||||||||||||||||||||||| | ||||||    
T  29623533 tattatttatgagtttgttaatgtagtttatgaaaaaacaacttatgaa 29623485  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 478
Target Start/End: Complemental strand, 41196770 - 41196717
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaag 478  Q
    ||||||||| | ||||| |||| ||||||||||||||||||||||| |||||||    
T  41196770 tatgtattattcataagcttgtcaatgtagtttatgaaaaaacagcttatgaag 41196717  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 470
Target Start/End: Original strand, 49971281 - 49971322
Alignment:
Q  429 tattacttataagattgttaatgtagtttatgaaaaaacagc 470  Q
    ||||| ||||||| ||||||||||||||||||||||||||||    
T  49971281 tattatttataagcttgttaatgtagtttatgaaaaaacagc 49971322  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 468
Target Start/End: Original strand, 26542999 - 26543042
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaaca 468  Q
    |||||||||  |||||| ||||||||||||||||||||||||||    
T  26542999 tatgtattatatataagtttgttaatgtagtttatgaaaaaaca 26543042  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 425 - 467
Target Start/End: Original strand, 15631930 - 15631972
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaac 467  Q
    ||||||||| ||||||| ||||||||||| |||||||||||||    
T  15631930 tatgtattatttataagtttgttaatgtattttatgaaaaaac 15631972  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 486
Target Start/End: Original strand, 4068141 - 4068202
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaaggtactatt 486  Q
    ||||||||| | ||||| |||| || |||||||||||||||||| | ||||||| |||||||    
T  4068141 tatgtattattcataagcttgtcaaggtagtttatgaaaaaacaacttatgaagatactatt 4068202  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 478
Target Start/End: Complemental strand, 6337816 - 6337763
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaag 478  Q
    ||||||||| | ||||| |||| || |||||||||||||||||||| |||||||    
T  6337816 tatgtattattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaag 6337763  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 478
Target Start/End: Complemental strand, 3069913 - 3069861
Alignment:
Q  426 atgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaag 478  Q
    |||||||| | ||||| |||| || |||||||||||||||||||| |||||||    
T  3069913 atgtattattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaag 3069861  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 481
Target Start/End: Original strand, 5610534 - 5610590
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaaggta 481  Q
    ||||||||| ||||||| || |||||||||||||| |||||| ||  ||||||||||    
T  5610534 tatgtattatttataagctttttaatgtagtttataaaaaaatagtttatgaaggta 5610590  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 465
Target Start/End: Original strand, 12256637 - 12256673
Alignment:
Q  429 tattacttataagattgttaatgtagtttatgaaaaa 465  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  12256637 tattatttataagattgttgatgtagtttatgaaaaa 12256673  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 477
Target Start/End: Original strand, 18327550 - 18327602
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaa 477  Q
    ||||||||||| ||||| |||| ||  ||||||||||||||||||| ||||||    
T  18327550 tatgtattactcataagcttgtcaagatagtttatgaaaaaacagcttatgaa 18327602  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 478
Target Start/End: Original strand, 48819326 - 48819378
Alignment:
Q  426 atgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaag 478  Q
    |||||||| | ||||| |||| || |||||||||||||||||||| |||||||    
T  48819326 atgtattattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaag 48819378  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 425 - 471
Target Start/End: Complemental strand, 33321463 - 33321417
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacagca 471  Q
    ||||||||||| ||||| |||| || |||||||||||||||||||||    
T  33321463 tatgtattactcataagcttgtcaaggtagtttatgaaaaaacagca 33321417  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 462
Target Start/End: Original strand, 8441499 - 8441536
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaa 462  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  8441499 tatgtattatttataagtttgttaatgtagtttatgaa 8441536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 478
Target Start/End: Original strand, 11777010 - 11777063
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaag 478  Q
    ||||||||| ||||||| |||||||  ||||||||||||| ||||| |||||||    
T  11777010 tatgtattatttataagcttgttaagttagtttatgaaaacacagcttatgaag 11777063  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 467
Target Start/End: Complemental strand, 12238542 - 12238501
Alignment:
Q  426 atgtattacttataagattgttaatgtagtttatgaaaaaac 467  Q
    |||||||| ||||||| ||||||| |||||||||||||||||    
T  12238542 atgtattatttataagcttgttaaggtagtttatgaaaaaac 12238501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 462
Target Start/End: Complemental strand, 35515540 - 35515503
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaa 462  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  35515540 tatgtattatttataagtttgttaatgtagtttatgaa 35515503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 478
Target Start/End: Complemental strand, 36501575 - 36501522
Alignment:
Q  425 tatgtattacttataagattgttaatgtagtttatgaaaaaacagcatatgaag 478  Q
    ||||||||| | ||||| |||| || |||||||||||||||||||| |||||||    
T  36501575 tatgtattattcataagcttgtcaaggtagtttatgaaaaaacagcttatgaag 36501522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 477
Target Start/End: Complemental strand, 16108178 - 16108130
Alignment:
Q  429 tattacttataagattgttaatgtagtttatgaaaaaacagcatatgaa 477  Q
    ||||| ||||||| ||||||| |||||||||||||||||| | ||||||    
T  16108178 tattatttataagtttgttaaggtagtttatgaaaaaacaacttatgaa 16108130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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