View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17432_low_1 (Length: 852)
Name: NF17432_low_1
Description: NF17432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17432_low_1 |
 | |
|
| [»] scaffold0016 (4 HSPs) |
| | |
|
| [»] scaffold0642 (2 HSPs) |
| | |
|
| [»] scaffold0345 (2 HSPs) |
| | |
|
| [»] scaffold0105 (2 HSPs) |
| | |
|
| [»] scaffold1526 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0016 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 489 - 832
Target Start/End: Complemental strand, 50993 - 50650
Alignment:
| Q |
489 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatattag |
588 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50993 |
aaaaaagatctgaaatgcatccaccgcaaagattcctaaaatgccatggatcatgattgaagattcaaagtaatcaaggagcattatttggtaatattag |
50894 |
T |
|
| Q |
589 |
ttatgccgacatgtctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
688 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50893 |
ttatgtcgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
50794 |
T |
|
| Q |
689 |
gtgaattatgtaagggctgggttaacaattttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagctt |
788 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50793 |
gtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagctt |
50694 |
T |
|
| Q |
789 |
gaatcttggatttgatattactttagagtaaaccatgtgaatct |
832 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
50693 |
gaatcttggatttaatattactttagagtaaaccatgtgaatct |
50650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 54115 - 53852
Alignment:
| Q |
1 |
ctattctttacaacttttaacttgttcaactttgggcttcattgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaatattactaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
54115 |
ctattctttacaacttttaacttgttcaactttgggcttcattgcttagaataaatgttatttagtacaaaatgtctgagatgaaattgaatatta--aa |
54018 |
T |
|
| Q |
101 |
gtcttagtaaatgagtactgaccaaattaccaaagaggatcaaaacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54017 |
gtcttagtaaatgagtactgacaaaattaccaaagaggatcaaaacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaa |
53918 |
T |
|
| Q |
201 |
tacttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53917 |
tacttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat |
53852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 285 - 419
Target Start/End: Complemental strand, 53857 - 53719
Alignment:
| Q |
285 |
acccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaa----acaatcatgaccgaacacggc |
380 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
53857 |
acccatccatgaattcactccagagcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaaacaatcatgaccgaacacggc |
53758 |
T |
|
| Q |
381 |
aaactcaaattctactccggccaccctcctccgccgtcg |
419 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
53757 |
aaactcaaatcctactccggccaccctcctccgccgtcg |
53719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 37661 - 37607
Alignment:
| Q |
37 |
cttcattgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaa |
91 |
Q |
| |
|
|||| ||||||||||||| |||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
37661 |
cttcgttgcatagaataattgttatttagaacaaaatttctacgatgaaattgaa |
37607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 489 - 832
Target Start/End: Original strand, 44498575 - 44498918
Alignment:
| Q |
489 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatattag |
588 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44498575 |
aaaaaagatctgaaatgcatccaccgcaaagattcctaaaatgccatggatcatgattgaagattcaaagtaatcaaggagcattatttggtaatattag |
44498674 |
T |
|
| Q |
589 |
ttatgccgacatgtctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
688 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498675 |
ttatgtcgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
44498774 |
T |
|
| Q |
689 |
gtgaattatgtaagggctgggttaacaattttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagctt |
788 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498775 |
gtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagctt |
44498874 |
T |
|
| Q |
789 |
gaatcttggatttgatattactttagagtaaaccatgtgaatct |
832 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44498875 |
gaatcttggatttaatattactttagagtaaaccatgtgaatct |
44498918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 203 - 490
Target Start/End: Original strand, 44495504 - 44495791
Alignment:
| Q |
203 |
cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcac |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44495504 |
cttactttctctctaacatcattccaatccggttcttcttctctcacactccattcatacccatgaacaaacaatcagttaaactcatccatgaattcac |
44495603 |
T |
|
| Q |
303 |
tccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaattctactccggcc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
44495604 |
tccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctattccggcc |
44495703 |
T |
|
| Q |
403 |
accctcctccgccgtcgtcgcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttcccatctcttcaccctaa |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44495704 |
accctcctccgccgtcgtcgcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttcccacctcttcaccctaa |
44495791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 287; Significance: 1e-160; HSPs: 2)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 489 - 835
Target Start/End: Original strand, 6958 - 7291
Alignment:
| Q |
489 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatattag |
588 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6958 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttggtaatattag |
7057 |
T |
|
| Q |
589 |
ttatgccgacatgtctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
688 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7058 |
ttatgccgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
7157 |
T |
|
| Q |
689 |
gtgaattatgtaagggctgggttaacaattttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagctt |
788 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7158 |
gtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctgg-------------aagtatgttttgtttttaagctt |
7244 |
T |
|
| Q |
789 |
gaatcttggatttgatattactttagagtaaaccatgtgaatctgtg |
835 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7245 |
gaatcttggatttgatattactttagtgtaaaccatgtgaatctgtg |
7291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 203 - 490
Target Start/End: Original strand, 4102 - 4389
Alignment:
| Q |
203 |
cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcac |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4102 |
cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcac |
4201 |
T |
|
| Q |
303 |
tccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaattctactccggcc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4202 |
tccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggcc |
4301 |
T |
|
| Q |
403 |
accctcctccgccgtcgtcgcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttcccatctcttcaccctaa |
490 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4302 |
accctcctccgccgtcgttgcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttcccacctcttcaccctaa |
4389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 287; Significance: 1e-160; HSPs: 2)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 489 - 835
Target Start/End: Original strand, 16871 - 17204
Alignment:
| Q |
489 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatattag |
588 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16871 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttggtaatattag |
16970 |
T |
|
| Q |
589 |
ttatgccgacatgtctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
688 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16971 |
ttatgccgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
17070 |
T |
|
| Q |
689 |
gtgaattatgtaagggctgggttaacaattttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagctt |
788 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17071 |
gtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctgg-------------aagtatgttttgtttttaagctt |
17157 |
T |
|
| Q |
789 |
gaatcttggatttgatattactttagagtaaaccatgtgaatctgtg |
835 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17158 |
gaatcttggatttgatattactttagtgtaaaccatgtgaatctgtg |
17204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 203 - 490
Target Start/End: Original strand, 14014 - 14301
Alignment:
| Q |
203 |
cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcac |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14014 |
cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcac |
14113 |
T |
|
| Q |
303 |
tccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaattctactccggcc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14114 |
tccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggcc |
14213 |
T |
|
| Q |
403 |
accctcctccgccgtcgtcgcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttcccatctcttcaccctaa |
490 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14214 |
accctcctccgccgtcgttgcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttcccacctcttcaccctaa |
14301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 287; Significance: 1e-160; HSPs: 2)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 489 - 835
Target Start/End: Complemental strand, 22111 - 21778
Alignment:
| Q |
489 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatattag |
588 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22111 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttggtaatattag |
22012 |
T |
|
| Q |
589 |
ttatgccgacatgtctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
688 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22011 |
ttatgccgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
21912 |
T |
|
| Q |
689 |
gtgaattatgtaagggctgggttaacaattttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagctt |
788 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21911 |
gtgaattatgtaagggctgggttaactattttggatacaaatttgtatttgcaccttttgctgg-------------aagtatgttttgtttttaagctt |
21825 |
T |
|
| Q |
789 |
gaatcttggatttgatattactttagagtaaaccatgtgaatctgtg |
835 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21824 |
gaatcttggatttgatattactttagtgtaaaccatgtgaatctgtg |
21778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 203 - 490
Target Start/End: Complemental strand, 24967 - 24680
Alignment:
| Q |
203 |
cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcac |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24967 |
cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcac |
24868 |
T |
|
| Q |
303 |
tccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaattctactccggcc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24867 |
tccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggcc |
24768 |
T |
|
| Q |
403 |
accctcctccgccgtcgtcgcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttcccatctcttcaccctaa |
490 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24767 |
accctcctccgccgtcgttgcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttcccacctcttcaccctaa |
24680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 489 - 835
Target Start/End: Original strand, 3381177 - 3381510
Alignment:
| Q |
489 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatattag |
588 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3381177 |
aaaaaagatctgaaatgcatccacctc---gagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatattag |
3381273 |
T |
|
| Q |
589 |
ttatgccgacatgtctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgt |
688 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3381274 |
ttatgccgacatgtctttagtgaaaccattttggctatctaattgtttgttg----------agttaaaattttccatttatggagttgtcatattttgt |
3381363 |
T |
|
| Q |
689 |
gtgaattatgtaagggctgggttaacaattttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagctt |
788 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3381364 |
atgaaatatgtaagggctgggttaactattttagatacaaatttgtatttgcaccttttgctggattggctttaactaagtatgttttgtttttaagctt |
3381463 |
T |
|
| Q |
789 |
gaatcttggatttgatattactttagagtaaaccatgtgaatctgtg |
835 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3381464 |
gaatcttggatttgatattactttagagtaaaccatgtgaatctgtg |
3381510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 203 - 490
Target Start/End: Original strand, 3378229 - 3378519
Alignment:
| Q |
203 |
cttactttctctctaacatcattccaatccggtccttcttctctcacactcta-----ttcatacccatgaacaaacaatcagttaaacccatccatgaa |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3378229 |
cttactttctctctaacatcattccaatccggtccttcttctctcacactctattctattcatacacatgaacaaacaatcagttaaacccatccatgaa |
3378328 |
T |
|
| Q |
298 |
ttcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaattctactc |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||| |
|
|
| T |
3378329 |
ttcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaatcatgaccgaacaatcc--tttcaaatcctactc |
3378426 |
T |
|
| Q |
398 |
cggccaccctcctccgccgtcgtcgcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttcccatctcttcaccctaa |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3378427 |
cggccaccctcctccgccgtcgtcgcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttcccacctcttcaccctaa |
3378519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 336 - 427
Target Start/End: Original strand, 30355844 - 30355936
Alignment:
| Q |
336 |
taacccccaacttccaccaa-acaaacaatcatgaccgaacacggcaaactcaaattctactccggccaccctcctccgccgtcgtcgcaatc |
427 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||| ||| |||||||||| |
|
|
| T |
30355844 |
taacccccaactcccaccaacacaaacaatcatgaccgaacacgacaaacccaaatcctcctccggccaccctcctcagccaccgtcgcaatc |
30355936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1526 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: scaffold1526
Description:
Target: scaffold1526; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 203 - 490
Target Start/End: Complemental strand, 1304 - 1012
Alignment:
| Q |
203 |
cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc-----atacccatgaacaaacaatcagttaaacccatccatgaa |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1304 |
cttactttctctctaacatcattccaatccggtccttcttctctcacactctattctattcatacacatgaacaaacaatcagttaaacccatccatgaa |
1205 |
T |
|
| Q |
298 |
ttcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaattctactc |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1204 |
ttcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactc |
1105 |
T |
|
| Q |
398 |
cggccaccctcctccgccgtcgtcgcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttcccatctcttcaccctaa |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1104 |
cggccaccctcctccgccgtcgtcgcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttcccacctcttcaccctaa |
1012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 250; Significance: 1e-138; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 203 - 460
Target Start/End: Original strand, 15707358 - 15707615
Alignment:
| Q |
203 |
cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcac |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15707358 |
cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcac |
15707457 |
T |
|
| Q |
303 |
tccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaattctactccggcc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15707458 |
tccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggcc |
15707557 |
T |
|
| Q |
403 |
accctcctccgccgtcgtcgcaatcctttcaacctccttagtacgagtctttccatgg |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15707558 |
accctcctccgccgtcgtcgcaatcctttcaacctctttagtacgagtctttccatgg |
15707615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 717 - 794
Target Start/End: Complemental strand, 9200166 - 9200091
Alignment:
| Q |
717 |
ttttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagcttgaatct |
794 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9200166 |
ttttggatccaaatttgtatt-gcaacttttt-tggattggctttagttaagtatgttttgtttttaagcttgaatct |
9200091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 717 - 794
Target Start/End: Complemental strand, 9201928 - 9201854
Alignment:
| Q |
717 |
ttttggatacaaatttgtatttgcaccttttgctggattggctttaattaagtatgttttgtttttaagcttgaatct |
794 |
Q |
| |
|
|||||||| |||||||||||| ||| |||| ||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
9201928 |
ttttggatccaaatttgtatt-gcaattttt--tggattggctttagttaagtaggttttgtttttaagcttgaatct |
9201854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 503 - 585
Target Start/End: Original strand, 2303461 - 2303543
Alignment:
| Q |
503 |
atgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatat |
585 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| ||| ||||||||||||||||| || | ||||||| ||||| ||||| |
|
|
| T |
2303461 |
atgcatccactactaagagtcctaaaatgccatttatcaagattgaagattcaaagtgattatggagcatgatttggcaatat |
2303543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 28336340 - 28336295
Alignment:
| Q |
302 |
ctccagatcggtgagtggcttcgttcttccctcctaacccccaact |
347 |
Q |
| |
|
|||||||| ||| ||||| ||||||| ||||||||||||||||||| |
|
|
| T |
28336340 |
ctccagattggttagtggtttcgttcatccctcctaacccccaact |
28336295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 1e-52; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 599 - 764
Target Start/End: Complemental strand, 30112048 - 30111884
Alignment:
| Q |
599 |
atgtctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgtgtgaattatg |
698 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||| ||||||| ||||| |||||||||||||||| | |||||||||||||||||||| ||| |
|
|
| T |
30112048 |
atgtctttagtgaaatcattttggctatctaatgttttgttcaccctttcgtagttgaaattttccatttatg-atttgtcatattttgtgtgaataatg |
30111950 |
T |
|
| Q |
699 |
taagggctgggttaacaattttggatacaaatttgtatttgcaccttttgctggattggctttaat |
764 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
30111949 |
taagggctgagttaactattttggatacaaatttgtatttgtaacttttgctggattggctttaat |
30111884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 774 - 830
Target Start/End: Complemental strand, 30110775 - 30110718
Alignment:
| Q |
774 |
tttgtttttaagcttgaatcttggatttgatatt-actttagagtaaaccatgtgaat |
830 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30110775 |
tttgtttttaagcttatatcttggatttgatattcactttagagtaaaccatgtgaat |
30110718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 489 - 561
Target Start/End: Complemental strand, 30112131 - 30112059
Alignment:
| Q |
489 |
aaaaaagatctgaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaa |
561 |
Q |
| |
|
||||||||||| |||||||||||| |||||||| |||||||| |||| ||| ||||||||||||||||||| |
|
|
| T |
30112131 |
aaaaaagatctaaaatgcatccactccaaagagttctaaaatgtcatgcatcaagattgaagattcaaagtaa |
30112059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 4e-28; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 21221667 - 21221759
Alignment:
| Q |
1 |
ctattctttacaacttttaacttgttcaactttgggcttcattgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaata |
93 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||| |||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21221667 |
ctattctttacaactttgaacttgttcaattttgagctttgttgcatagaataattgttatttagaacaaaatgtctgagatgaaattgaata |
21221759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 21140109 - 21140194
Alignment:
| Q |
23 |
tgttcaactttgggcttcattgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaatattactaagtcttagtaaa |
111 |
Q |
| |
|
||||||| |||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21140109 |
tgttcaattttgggcttcgttgcatagaataattgttatttagaacaaaatgtctgagatgaaattgaatat---taagtcttagtaaa |
21140194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 21221835 - 21221922
Alignment:
| Q |
118 |
ctgaccaaattaccaaagaggatcaa---aacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaata |
202 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| | || |||||||| || |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21221835 |
ctgaacaaattaccaaagaggatcaagaaaacactgaaaataggaattatctgtggctgatgatgttgctcctaatagtgatataata |
21221922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 21246005 - 21245957
Alignment:
| Q |
43 |
tgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaa |
91 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
21246005 |
tgcatagaataattgttatttataacaaaatgtatgagatgaaattgaa |
21245957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 21181521 - 21181555
Alignment:
| Q |
1 |
ctattctttacaacttttaacttgttcaactttgg |
35 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21181521 |
ctattctttacaacttttaacttgttcaattttgg |
21181555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 21200685 - 21200739
Alignment:
| Q |
37 |
cttcattgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaa |
91 |
Q |
| |
|
|||| ||||||| | ||| |||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
21200685 |
cttcgttgcataaagtaattgttatttagaacaaaatgtctaagatgaaattgaa |
21200739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 315 - 427
Target Start/End: Complemental strand, 17850613 - 17850502
Alignment:
| Q |
315 |
agtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaattctactccggccaccctcctccgc |
414 |
Q |
| |
|
|||||||| |||| |||||| ||||||| | ||| ||| |||||||| |||||| |||||||| ||||||||||| || |||||| ||||| ||| ||| |
|
|
| T |
17850613 |
agtggctttgttcatccctcataacccc-agcttgcactaaacaaaccatcatgcccgaacacaacaaactcaaatcctcctccggacacccaccttcgc |
17850515 |
T |
|
| Q |
415 |
cgtcgtcgcaatc |
427 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
17850514 |
cgatgtcgcaatc |
17850502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 36933078 - 36933042
Alignment:
| Q |
329 |
tccctcctaacccccaacttccaccaaacaaacaatc |
365 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36933078 |
tccctcctaacccccaacttccaccgaacaaacaatc |
36933042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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