View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17432_low_11 (Length: 422)
Name: NF17432_low_11
Description: NF17432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17432_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 81823 - 82224
Alignment:
| Q |
1 |
aagaaatgccattacaagaaagataaacaataggtcatttcaatcaagtgtttttaaccaatcaaactcaactcatttctttaatcaaatacaaagagaa |
100 |
Q |
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| T |
81823 |
aagaaatgccattacaagaaagataaacaataggtcatttcaatcaagtgtttttaaccaatcaaactcaactcatttctttaatcaaatacaaagagaa |
81922 |
T |
|
| Q |
101 |
gcataaatataaacttgtcgactggcacaagaacttgtcactctaactagaaaattgagcatctatattcgcttgcttcctaacaaagttaaccacagaa |
200 |
Q |
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| T |
81923 |
gcataattataaacttgtcgactggcacaagaacttgtcactctaactagaaaat-gagcatctatattcgcttgcttcctaacaaagttaaccacagaa |
82021 |
T |
|
| Q |
201 |
ctacaatttaaagctagaatatgcctaatattagcaacaaagatgctatactcagagaccccttcactaactgcataaatagcatcacataaaattcaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
82022 |
ctacaatttaaagctagaatatgcctaatattagcaacaaagatgctaaactcagagaccccttcactaactgcataaatagcatcacataaaattcaag |
82121 |
T |
|
| Q |
301 |
aatcagtaaagaaagtcatactatgagttcccaattcccatgtcttgcacctatggcatagcattctgcaacgcagcagcctcagctttagggactcgca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
82122 |
aatcagtaaagaaagtcatactatgagttcccaattcccatgtcttgcacctatggcatagcattctgcaatgcagcagcctcagctttagggactcgca |
82221 |
T |
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| Q |
401 |
att |
403 |
Q |
| |
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||| |
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| T |
82222 |
att |
82224 |
T |
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