View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17432_low_13 (Length: 406)
Name: NF17432_low_13
Description: NF17432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17432_low_13 |
 | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 29)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 4612400 - 4612038
Alignment:
| Q |
1 |
cggtgttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacac |
100 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4612400 |
cggtgttgacgaatgttatgtgaaagcctctaaggtgaagaagttttgctagtttgattaatggattgatatggccttgaactggatatggaattaacac |
4612301 |
T |
|
| Q |
101 |
tgcatgtggttttgaatcactcatttctgagtttgtgtttgaatgttgtgtacatggataagccaatggttttaacctttaatagcaatattgccaatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4612300 |
tgcatgtggttttgaatcactcatttctgagtttgtgtttgaatgttgtgtacagggataagccaatggttttaacctttaatagcaatattgccaatgt |
4612201 |
T |
|
| Q |
201 |
ttcttggatttgtggaaaaaagataatagaggaaaagacaaggaagcttacaaagtctgagatatttttcttttaaaatgaaaaaattccaacttaacac |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4612200 |
ttcttggatttgtgga-aaaagataatagaggaaaagacaaggaagcttacaaagtctgagatatttttcttttaaaatgaaaaaattccaacttaacac |
4612102 |
T |
|
| Q |
301 |
aataattgatgcatactagtgaaaccaccactttttgatatactctatgagaaaactagaataa |
364 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4612101 |
aataattgatgcatactagtgaagccaccactttttgatatactctatgagaaaactagaataa |
4612038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 3 - 144
Target Start/End: Original strand, 4587080 - 4587221
Alignment:
| Q |
3 |
gtgttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacactg |
102 |
Q |
| |
|
||||| ||||| |||||||||| |||| |||| |||||||||| ||| |||| | |||||||||| |||||||||||||||| |||| |||||||| | |
|
|
| T |
4587080 |
gtgtttacaaaggttatgtgaaatcctcgaaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacag |
4587179 |
T |
|
| Q |
103 |
catgtggttttgaatcactcatttctgagtttgtgtttgaat |
144 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4587180 |
catgaggttttgaatcactcatttctgagtttgtgtttgaat |
4587221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 148
Target Start/End: Original strand, 4558585 - 4558720
Alignment:
| Q |
15 |
gttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacactgcatgtggttttg |
114 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||| |||| | |||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4558585 |
gttatgtgaaatcctctaaggtgaagaagttttgctagtttcaacaatggattgatatggccttgaactggatatggaattaacacagcatgtggttttt |
4558684 |
T |
|
| Q |
115 |
aatcactcatttctgag--tttgtgtttgaatgttg |
148 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||| |
|
|
| T |
4558685 |
tatcactcatttttgagtttttgtgtttgaatgttg |
4558720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 15 - 148
Target Start/End: Original strand, 4572426 - 4572561
Alignment:
| Q |
15 |
gttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacactgcatgtggttttg |
114 |
Q |
| |
|
|||||||||| ||||||||| |||||| ||||||| ||| | |||||||||| ||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
4572426 |
gttatgtgaaaacctctaaggtgaagaaattttgctagttgcaacaatggattgatatggccttgaactggatatgggattaacacagcatgtggttttt |
4572525 |
T |
|
| Q |
115 |
aatcactcatttctgag--tttgtgtttgaatgttg |
148 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| |
|
|
| T |
4572526 |
tatcactcattattgagtttttgtgtttgaatgttg |
4572561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 4581460 - 4581568
Alignment:
| Q |
1 |
cggtgttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacac |
100 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||| ||||||| |||||| || | ||||||||| ||| ||| ||||||| |||||||||||| ||||| |
|
|
| T |
4581460 |
cggtgttgacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtgttattaatggagtgatatgtccttgaagtggatatggaatcaacac |
4581559 |
T |
|
| Q |
101 |
tgcatgtgg |
109 |
Q |
| |
|
||||||||| |
|
|
| T |
4581560 |
tgcatgtgg |
4581568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 4618747 - 4618859
Alignment:
| Q |
1 |
cggtgttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacac |
100 |
Q |
| |
|
||||||| ||||| |||||||||| |||||||||| ||||||| |||||| |||||| |||||||||| |||||||||||||||||||||||| | ||| |
|
|
| T |
4618747 |
cggtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcac |
4618846 |
T |
|
| Q |
101 |
tgcatgtggtttt |
113 |
Q |
| |
|
||||||||||| |
|
|
| T |
4618847 |
aacatgtggtttt |
4618859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 4569516 - 4569607
Alignment:
| Q |
1 |
cggtgttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatgga |
92 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||| |||||||||||||| |||| | ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
4569516 |
cggtgttgacaaaggttatgtgaaagcctctaaggtgaagaagttttgctagtttcaataatggattgatatggccttgaagtggatatgga |
4569607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 3173451 - 3173561
Alignment:
| Q |
3 |
gtgttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacactg |
102 |
Q |
| |
|
||||| ||||| |||||||||| |||||||| | |||| ||||||||| |||| | |||| ||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
3173451 |
gtgtttacaaaggttatgtgaaagcctctaaagtgaagtagttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactg |
3173550 |
T |
|
| Q |
103 |
catgtggtttt |
113 |
Q |
| |
|
||||||||||| |
|
|
| T |
3173551 |
catgtggtttt |
3173561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 4517786 - 4517894
Alignment:
| Q |
1 |
cggtgttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacac |
100 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||| |||||||||||||| |||| | || ||||||| ||||||||||| |||||||||| ||| ||| |
|
|
| T |
4517786 |
cggtgttgacaaaggttatgtgaaagcctctaagatgaagaagttttgctagttttaacaacggattgatatggccttgaagtggatatggagttatcac |
4517885 |
T |
|
| Q |
101 |
tgcatgtgg |
109 |
Q |
| |
|
||||||||| |
|
|
| T |
4517886 |
tgcatgtgg |
4517894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 4507357 - 4507469
Alignment:
| Q |
1 |
cggtgttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacac |
100 |
Q |
| |
|
||||||| ||||| |||||||||| ||||| |||| ||||||| || ||| |||||| |||||||||| |||||||||| |||||||||||| ||||| |
|
|
| T |
4507357 |
cggtgttaacaaaggttatgtgaaagcctcgaaggtgaagaagcttagctagtttgaacaatggattgatatggccttgagttggatatggaatcaacac |
4507456 |
T |
|
| Q |
101 |
tgcatgtggtttt |
113 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4507457 |
agcatgtggtttt |
4507469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 4513661 - 4513549
Alignment:
| Q |
1 |
cggtgttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacac |
100 |
Q |
| |
|
||||||| ||||| |||||||||| |||||||||| |||| ||||||||| | ||| | |||||||| ||||||||||| |||||||||||| ||||| |
|
|
| T |
4513661 |
cggtgttaacaaaggttatgtgaaagcctctaaggtgaagtagttttgctaatctgaacattggattgatatggccttgaagtggatatggaatcaacac |
4513562 |
T |
|
| Q |
101 |
tgcatgtggtttt |
113 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4513561 |
agcatgtggtttt |
4513549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 4599609 - 4599756
Alignment:
| Q |
1 |
cggtgttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacac |
100 |
Q |
| |
|
||||||| || || ||||||| || ||||||||| |||||| |||||| ||||||||||| |||||| || ||||||| ||| ||||||| || || |
|
|
| T |
4599609 |
cggtgttcacgaaggttatgtaaaatcctctaaggtgaagaatctttgctagtttgattaatagattgatatttccttgaattggtaatggaatcaatac |
4599708 |
T |
|
| Q |
101 |
tgcatgtggttttgaatcactcatttctgagtttgtgtttgaatgttg |
148 |
Q |
| |
|
||||||| ||||| | ||||||||| ||||||||||||||||||||| |
|
|
| T |
4599709 |
tgcatgtagttttttaccactcatttgtgagtttgtgtttgaatgttg |
4599756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 4575903 - 4576009
Alignment:
| Q |
3 |
gtgttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacactg |
102 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||| |||| ||||||||| ||| | |||| ||||| |||||||||||||||| ||||| ||||||||| |
|
|
| T |
4575903 |
gtgttaacaaaggttatgtgaaagcctctaaggtgaagcagttttgctattttcaacaatgcattgatatggccttgaactggaaatggagttaacactg |
4576002 |
T |
|
| Q |
103 |
catgtgg |
109 |
Q |
| |
|
||||||| |
|
|
| T |
4576003 |
catgtgg |
4576009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 4482311 - 4482423
Alignment:
| Q |
1 |
cggtgttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacac |
100 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||| |||| |||||| || ||| | |||| ||||| |||||||||| ||||| ||||| | ||||| |
|
|
| T |
4482311 |
cggtgttgacaaaggttatgtgaaagcctctaaggtgaagtagttttcctattttcaacaatgcattgatatggccttgagctggaaatggagtcaacac |
4482410 |
T |
|
| Q |
101 |
tgcatgtggtttt |
113 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4482411 |
tgcatgtggtttt |
4482423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 4603556 - 4603668
Alignment:
| Q |
1 |
cggtgttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacac |
100 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||| ||| ||||||||| |||| | | |||||||| ||||||||||| |||||||||||| ||||| |
|
|
| T |
4603556 |
cggtgttgacaaaggttatgtgaaatcctctaaggtgaaatagttttgctagtttcaacattggattgatatggccttgaagtggatatggaatcaacac |
4603655 |
T |
|
| Q |
101 |
tgcatgtggtttt |
113 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
4603656 |
agcatgttgtttt |
4603668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 4471362 - 4471473
Alignment:
| Q |
3 |
gtgttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacactg |
102 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| ||||||| |||||| |||| | |||| ||||| |||||||||| ||||| ||||||| || || | |
|
|
| T |
4471362 |
gtgttgacaaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacag |
4471461 |
T |
|
| Q |
103 |
catgtggttttg |
114 |
Q |
| |
|
||||||| |||| |
|
|
| T |
4471462 |
catgtggctttg |
4471473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 4258856 - 4258750
Alignment:
| Q |
3 |
gtgttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacactg |
102 |
Q |
| |
|
||||||||||| |||||||||| ||| ||| | ||||||| || ||| |||||| |||||||||| |||||||||| ||||||||||||| ||||| | |
|
|
| T |
4258856 |
gtgttgacaaaggttatgtgaaaacctttaaagtgaagaagcttagctagtttgaacaatggattgatatggccttgagctggatatggaatcaacacag |
4258757 |
T |
|
| Q |
103 |
catgtgg |
109 |
Q |
| |
|
||||||| |
|
|
| T |
4258756 |
catgtgg |
4258750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 4488877 - 4488771
Alignment:
| Q |
3 |
gtgttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacactg |
102 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| |||| |||||| || |||| | |||| ||||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
4488877 |
gtgttgacaaaggttatgtgaaatcctctaaggtgaagtagttttcctagtttcaacaatgcattgatatggccttgaactggaaatggtgttaacactg |
4488778 |
T |
|
| Q |
103 |
catgtgg |
109 |
Q |
| |
|
||||||| |
|
|
| T |
4488777 |
catgtgg |
4488771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 4594458 - 4594568
Alignment:
| Q |
3 |
gtgttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacactg |
102 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| ||||||||||||| |||||| |||||||| | ||| ||||||| |||| |||||| ||||| | |
|
|
| T |
4594458 |
gtgttgacaaaggttatgtgaaatcctctaaggtgaagaagttttgcaagtttgaacaatggatttatatgtccttgaagtggagctggaatcaacacag |
4594557 |
T |
|
| Q |
103 |
catgtggtttt |
113 |
Q |
| |
|
||||||||||| |
|
|
| T |
4594558 |
catgtggtttt |
4594568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 4627598 - 4627704
Alignment:
| Q |
3 |
gtgttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacactg |
102 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| |||| | ||||||| || | | |||||||||| ||||||||||| |||| ||||||| ||||| | |
|
|
| T |
4627598 |
gtgttgacaaaggttatgtgaaagcctctaaggtgaagtaattttgctagtatcaacaatggattgatatggccttgaagtggaaatggaatcaacacag |
4627697 |
T |
|
| Q |
103 |
catgtgg |
109 |
Q |
| |
|
||||||| |
|
|
| T |
4627698 |
catgtgg |
4627704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 4265737 - 4265626
Alignment:
| Q |
3 |
gtgttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacactg |
102 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| ||||||| ||| || | |||| |||| ||||| ||||||||||| |||| |||||| ||||| | |
|
|
| T |
4265737 |
gtgttgacaaaggttatgtgaaagcctctaaggtgaagaagctttcctagattgaacaatgcattgatatggccttgaaatggagctggaatcaacacag |
4265638 |
T |
|
| Q |
103 |
catgtggttttg |
114 |
Q |
| |
|
||||||| |||| |
|
|
| T |
4265637 |
catgtggctttg |
4265626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 4623762 - 4623861
Alignment:
| Q |
10 |
caaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacactgcatgtgg |
109 |
Q |
| |
|
|||| |||||||||| |||| ||||| |||||| |||||| |||||| |||||||||| ||| |||||||||||||||| ||| ||||| |||||||| |
|
|
| T |
4623762 |
caaaggttatgtgaaagcctttaaggtaaagaagctttgctagtttgaacaatggattgatatgaccttgaactggatatgcaatcaacacagcatgtgg |
4623861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 4565477 - 4565587
Alignment:
| Q |
3 |
gtgttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacactg |
102 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||| ||||||||||||| |||||| |||||||| | ||| ||||||| |||| |||||| ||||| | |
|
|
| T |
4565477 |
gtgttgacaaaggttatatgaaatcctctaaggtgaagaagttttgcaagtttgaacaatggatttatatgtccttgaaatggagctggaatcaacacag |
4565576 |
T |
|
| Q |
103 |
catgtggtttt |
113 |
Q |
| |
|
||||||||||| |
|
|
| T |
4565577 |
catgtggtttt |
4565587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 4255460 - 4255395
Alignment:
| Q |
44 |
ttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacactgcatgtgg |
109 |
Q |
| |
|
||||||| |||||| |||| |||||| |||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
4255460 |
ttttgctagtttgaataatagattgatatggccttgaactggatatggaatcaacacagcatgtgg |
4255395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 4462655 - 4462766
Alignment:
| Q |
3 |
gtgttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacactg |
102 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| |||| |||||| || |||| | |||| ||||| ||||||||| |||| ||||||| ||||| | |
|
|
| T |
4462655 |
gtgttgacaaaggttatgtgaaaacctctaaggtgaagtagttttcctagtttcaacaatgcattgatatggccttgggatggacatggaatcaacacag |
4462754 |
T |
|
| Q |
103 |
catgtggttttg |
114 |
Q |
| |
|
||||||| |||| |
|
|
| T |
4462755 |
catgtggctttg |
4462766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 337
Target Start/End: Original strand, 4572668 - 4572746
Alignment:
| Q |
258 |
tgagatatttttcttttaaaatgaaaaaattccaacttaacacaataattgatgcatactagtgaaaccaccactttttg |
337 |
Q |
| |
|
|||||| |||||||| ||| |||||| ||||| || | | ||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
4572668 |
tgagatctttttcttataatatgaaataattctaagtga-cacaataattgatgcatactagtcaagtcaccactttttg |
4572746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 4497868 - 4497819
Alignment:
| Q |
60 |
aatggattgagatggccttgaactggatatggaattaacactgcatgtgg |
109 |
Q |
| |
|
|||||||||| |||||||| || |||| ||||| |||||||||||||||| |
|
|
| T |
4497868 |
aatggattgatatggccttaaattggaaatggagttaacactgcatgtgg |
4497819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 4493415 - 4493463
Alignment:
| Q |
65 |
attgagatggccttgaactggatatggaattaacactgcatgtggtttt |
113 |
Q |
| |
|
||||| ||| |||||| ||||| ||||||| |||||||||||||||||| |
|
|
| T |
4493415 |
attgatatgaccttgagctggaaatggaatcaacactgcatgtggtttt |
4493463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 4562123 - 4562220
Alignment:
| Q |
16 |
ttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatgg----aattaacactgcatgtgg |
109 |
Q |
| |
|
||||||||| |||||| ||| |||| ||||||||| ||| | |||| ||||| ||| |||||||||||| |||| |||||||||||||||||| |
|
|
| T |
4562123 |
ttatgtgaaagcctcttaggtgaagcagttttgctattttcaacaatgcattgatatgaccttgaactggaaatggagttaattaacactgcatgtgg |
4562220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 2272 - 2382
Alignment:
| Q |
3 |
gtgttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacactg |
102 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| ||||||| |||||| |||||| ||||||||||| |||||||||||||||||||||||| ||||| | |
|
|
| T |
2272 |
gtgttgacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacag |
2371 |
T |
|
| Q |
103 |
catgtggtttt |
113 |
Q |
| |
|
||||||||||| |
|
|
| T |
2372 |
catgtggtttt |
2382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 2131 - 2021
Alignment:
| Q |
3 |
gtgttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacactg |
102 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| ||||||| |||||| |||||| |||||||||| |||||||||||||||||||||||| | ||| |
|
|
| T |
2131 |
gtgttgacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaa |
2032 |
T |
|
| Q |
103 |
catgtggtttt |
113 |
Q |
| |
|
||||||||||| |
|
|
| T |
2031 |
catgtggtttt |
2021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 1282887 - 1282992
Alignment:
| Q |
9 |
acaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacactgcatgtg |
108 |
Q |
| |
|
||||| ||||||| || |||||||||| |||| ||||||||| |||||| |||||||||| |||||||||| ||||||||||||| ||||| ||||||| |
|
|
| T |
1282887 |
acaaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcaacacagcatgtg |
1282986 |
T |
|
| Q |
109 |
gttttg |
114 |
Q |
| |
|
|||||| |
|
|
| T |
1282987 |
gttttg |
1282992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 20862487 - 20862380
Alignment:
| Q |
6 |
ttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacactgcat |
105 |
Q |
| |
|
|||||||||||||||| || |||||||||| |||| ||||||||| |||| | | |||||||| ||| ||||||| |||||||||| |||||||||||| |
|
|
| T |
20862487 |
ttgacaaatgttatgtaaaagcctctaaggtgaagtagttttgctagttttaacattggattgatatgaccttgaagtggatatggagttaacactgcat |
20862388 |
T |
|
| Q |
106 |
gtggtttt |
113 |
Q |
| |
|
|||||||| |
|
|
| T |
20862387 |
gtggtttt |
20862380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 1675992 - 1676079
Alignment:
| Q |
26 |
gcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacactgcatgtggtttt |
113 |
Q |
| |
|
|||||||||| ||| |||||||||| |||||| |||||||||| |||||||||| ||||||||||||| ||||| ||||||| |||| |
|
|
| T |
1675992 |
gcctctaaggtgaataagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatgaacacagcatgtgatttt |
1676079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 3088191 - 3088299
Alignment:
| Q |
1 |
cggtgttgacaaatgttatgtgaaggcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacac |
100 |
Q |
| |
|
|||| |||||||| |||||||||| |||| ||||| |||||||||||||| |||| | |||||||| | ||| ||||||| |||||||||||| ||||| |
|
|
| T |
3088191 |
cggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacac |
3088290 |
T |
|
| Q |
101 |
tgcatgtgg |
109 |
Q |
| |
|
|||||||| |
|
|
| T |
3088291 |
agcatgtgg |
3088299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 1229 - 1316
Alignment:
| Q |
26 |
gcctctaaggggaagaagttttgctggtttgattaatggattgagatggccttgaactggatatggaattaacactgcatgtggtttt |
113 |
Q |
| |
|
|||||||||| ||| |||||||||| |||||| |||||||||| |||||||||| ||||||||||||| ||||| ||||||| |||| |
|
|
| T |
1229 |
gcctctaaggtgaataagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatgaacacagcatgtgatttt |
1316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University