View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17432_low_16 (Length: 347)

Name: NF17432_low_16
Description: NF17432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17432_low_16
NF17432_low_16
[»] scaffold0016 (3 HSPs)
scaffold0016 (1-305)||(53813-54115)
scaffold0016 (301-337)||(51254-51290)
scaffold0016 (37-91)||(37607-37661)
[»] chr6 (6 HSPs)
chr6 (1-93)||(21221667-21221759)
chr6 (23-111)||(21140109-21140194)
chr6 (118-202)||(21221835-21221922)
chr6 (43-91)||(21245957-21246005)
chr6 (1-35)||(21181521-21181555)
chr6 (37-91)||(21200685-21200739)
[»] chr4 (4 HSPs)
chr4 (203-266)||(15707358-15707421)
chr4 (261-305)||(15707440-15707484)
chr4 (301-337)||(15708819-15708855)
chr4 (301-334)||(26795948-26795981)
[»] scaffold0642 (3 HSPs)
scaffold0642 (203-266)||(4102-4165)
scaffold0642 (261-305)||(4184-4228)
scaffold0642 (301-337)||(6663-6699)
[»] scaffold0345 (3 HSPs)
scaffold0345 (203-266)||(14014-14077)
scaffold0345 (261-305)||(14096-14140)
scaffold0345 (301-337)||(16576-16612)
[»] scaffold0105 (3 HSPs)
scaffold0105 (203-266)||(24904-24967)
scaffold0105 (301-337)||(22370-22406)
scaffold0105 (261-305)||(24841-24885)
[»] scaffold1526 (2 HSPs)
scaffold1526 (203-258)||(1249-1304)
scaffold1526 (261-305)||(1173-1217)
[»] chr8 (3 HSPs)
chr8 (203-266)||(44495504-44495567)
chr8 (301-337)||(44498151-44498187)
chr8 (264-305)||(44495589-44495630)
[»] chr2 (3 HSPs)
chr2 (203-258)||(3378229-3378284)
chr2 (261-305)||(3378316-3378360)
chr2 (301-337)||(3380883-3380919)


Alignment Details
Target: scaffold0016 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 54115 - 53813
Alignment:
Q  1 ctattctttacaacttttaacttgttcaactttgggcttcattgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaatattactaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  54115 ctattctttacaacttttaacttgttcaactttgggcttcattgcttagaataaatgttatttagtacaaaatgtctgagatgaaattgaatatta--aa 54018  T
Q  101 gtcttagtaaatgagtactgaccaaattaccaaagaggatcaaaacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaa 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54017 gtcttagtaaatgagtactgacaaaattaccaaagaggatcaaaacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaa 53918  T
Q  201 tacttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccatccatgaattcactctagagcggtgagtggcttcg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  53917 tacttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccatccatgaattcactccagagcggtgagtggcttcg 53818  T
Q  301 ttctt 305  Q
    |||||    
T  53817 ttctt 53813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 51290 - 51254
Alignment:
Q  301 ttcttttatgcccatcacatagaggatatagtataat 337  Q
    |||||||||||||||||||||||||||||||||||||    
T  51290 ttcttttatgcccatcacatagaggatatagtataat 51254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 37661 - 37607
Alignment:
Q  37 cttcattgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaa 91  Q
    |||| ||||||||||||| |||||||||| ||||||| |||  ||||||||||||    
T  37661 cttcgttgcatagaataattgttatttagaacaaaatttctacgatgaaattgaa 37607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 21221667 - 21221759
Alignment:
Q  1 ctattctttacaacttttaacttgttcaactttgggcttcattgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaata 93  Q
    ||||||||||||||||| ||||||||||| |||| ||||  ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  21221667 ctattctttacaactttgaacttgttcaattttgagctttgttgcatagaataattgttatttagaacaaaatgtctgagatgaaattgaata 21221759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 21140109 - 21140194
Alignment:
Q  23 tgttcaactttgggcttcattgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaatattactaagtcttagtaaa 111  Q
    ||||||| |||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||   ||||||||||||||    
T  21140109 tgttcaattttgggcttcgttgcatagaataattgttatttagaacaaaatgtctgagatgaaattgaatat---taagtcttagtaaa 21140194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 21221835 - 21221922
Alignment:
Q  118 ctgaccaaattaccaaagaggatcaa---aacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaata 202  Q
    |||| |||||||||||||||||||||   |||| | || |||||||| || |||||||||||||||||||||||||||||||| ||||    
T  21221835 ctgaacaaattaccaaagaggatcaagaaaacactgaaaataggaattatctgtggctgatgatgttgctcctaatagtgatataata 21221922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 21246005 - 21245957
Alignment:
Q  43 tgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaa 91  Q
    |||||||||||| |||||||||  ||||||||| |||||||||||||||    
T  21246005 tgcatagaataattgttatttataacaaaatgtatgagatgaaattgaa 21245957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 21181521 - 21181555
Alignment:
Q  1 ctattctttacaacttttaacttgttcaactttgg 35  Q
    ||||||||||||||||||||||||||||| |||||    
T  21181521 ctattctttacaacttttaacttgttcaattttgg 21181555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 21200685 - 21200739
Alignment:
Q  37 cttcattgcatagaataaatgttatttagtacaaaatgtctgagatgaaattgaa 91  Q
    |||| ||||||| | ||| |||||||||| ||||||||||| |||||||||||||    
T  21200685 cttcgttgcataaagtaattgttatttagaacaaaatgtctaagatgaaattgaa 21200739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 15707358 - 15707421
Alignment:
Q  203 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15707358 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 15707421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 15707440 - 15707484
Alignment:
Q  261 acccatccatgaattcactctagagcggtgagtggcttcgttctt 305  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  15707440 acccatccatgaattcactccagatcggtgagtggcttcgttctt 15707484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 15708819 - 15708855
Alignment:
Q  301 ttcttttatgcccatcacatagaggatatagtataat 337  Q
    |||||||||||||||||||||||||||||||||||||    
T  15708819 ttcttttatgcccatcacatagaggatatagtataat 15708855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 334
Target Start/End: Complemental strand, 26795981 - 26795948
Alignment:
Q  301 ttcttttatgcccatcacatagaggatatagtat 334  Q
    |||||||||||||||||||||||| |||||||||    
T  26795981 ttcttttatgcccatcacatagagtatatagtat 26795948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 4102 - 4165
Alignment:
Q  203 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 266  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4102 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 4165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 4184 - 4228
Alignment:
Q  261 acccatccatgaattcactctagagcggtgagtggcttcgttctt 305  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  4184 acccatccatgaattcactccagatcggtgagtggcttcgttctt 4228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 6663 - 6699
Alignment:
Q  301 ttcttttatgcccatcacatagaggatatagtataat 337  Q
    |||||||||||||||||||||||||||||||||||||    
T  6663 ttcttttatgcccatcacatagaggatatagtataat 6699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 14014 - 14077
Alignment:
Q  203 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 266  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14014 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 14077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 14096 - 14140
Alignment:
Q  261 acccatccatgaattcactctagagcggtgagtggcttcgttctt 305  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  14096 acccatccatgaattcactccagatcggtgagtggcttcgttctt 14140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 16576 - 16612
Alignment:
Q  301 ttcttttatgcccatcacatagaggatatagtataat 337  Q
    |||||||||||||||||||||||||||||||||||||    
T  16576 ttcttttatgcccatcacatagaggatatagtataat 16612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 266
Target Start/End: Complemental strand, 24967 - 24904
Alignment:
Q  203 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 266  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24967 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 24904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 22406 - 22370
Alignment:
Q  301 ttcttttatgcccatcacatagaggatatagtataat 337  Q
    |||||||||||||||||||||||||||||||||||||    
T  22406 ttcttttatgcccatcacatagaggatatagtataat 22370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 24885 - 24841
Alignment:
Q  261 acccatccatgaattcactctagagcggtgagtggcttcgttctt 305  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  24885 acccatccatgaattcactccagatcggtgagtggcttcgttctt 24841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1526 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 1304 - 1249
Alignment:
Q  203 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1304 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 1249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1526; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 1217 - 1173
Alignment:
Q  261 acccatccatgaattcactctagagcggtgagtggcttcgttctt 305  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  1217 acccatccatgaattcactccagatcggtgagtggcttcgttctt 1173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 44495504 - 44495567
Alignment:
Q  203 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 266  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  44495504 cttactttctctctaacatcattccaatccggttcttcttctctcacactccattcatacccat 44495567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 44498151 - 44498187
Alignment:
Q  301 ttcttttatgcccatcacatagaggatatagtataat 337  Q
    |||||||||||||||||||||||||||||||||||||    
T  44498151 ttcttttatgcccatcacatagaggatatagtataat 44498187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 44495589 - 44495630
Alignment:
Q  264 catccatgaattcactctagagcggtgagtggcttcgttctt 305  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  44495589 catccatgaattcactccagatcggtgagtggcttcgttctt 44495630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 3378229 - 3378284
Alignment:
Q  203 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3378229 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 3378284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 3378316 - 3378360
Alignment:
Q  261 acccatccatgaattcactctagagcggtgagtggcttcgttctt 305  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  3378316 acccatccatgaattcactccagatcggtgagtggcttcgttctt 3378360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 3380883 - 3380919
Alignment:
Q  301 ttcttttatgcccatcacatagaggatatagtataat 337  Q
    |||||||||||||||||||||||||||||||||||||    
T  3380883 ttcttttatgcccatcacatagaggatatagtataat 3380919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University