View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17432_low_2 (Length: 713)
Name: NF17432_low_2
Description: NF17432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17432_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 1 - 698
Target Start/End: Complemental strand, 32195146 - 32194441
Alignment:
| Q |
1 |
cttcaacgtgactgcaacagctaccacgactgctatttaaaacctcgagtacaattggacttgagagagtgtgtaggagaatgagaactgaatagctgct |
100 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32195146 |
cttcaacgtgaccacaacagttaccacgactgctatttaaaacctcgagtacaattggacttgagagagtgtgtaggagaatgagaactgaatagctgct |
32195047 |
T |
|
| Q |
101 |
acttttgtcattgtagagcttttataacctctttttaaatgtttgttgctttaacagtattaactgaatgcataaatatattttgcttgcacatagattt |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32195046 |
acttttgtcattgtagagcttttttaacctctttttaaatgtttgttgctttaacaatattaactgaatgcataaatatattttgcttgcacatagattt |
32194947 |
T |
|
| Q |
201 |
ttaaagcattttattgttcttgcagtcaacttgataacaacaactttgatggaaataacattccagattcttatggcaacatgtcaaaattattgaaact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
32194946 |
ttaaagcattttattgttcttgcagtcaacttgataacaacaactttggtggaaatagcattccagattcttatggcaacatgtcaaaattattgaaatt |
32194847 |
T |
|
| Q |
301 |
gtaagtgcactctatgatgatagcatgtgt------gctaagtacattccaatataaggagtgaagccatggtgctagaatcatta---ttttaatgttt |
391 |
Q |
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||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||| ||| ||||| | ||||||||| |
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| T |
32194846 |
gtaagtgcattctatgatgatatcatgtgtgctactgctaagtacattccaatataaggagtgaaaccatggtgcttgaaccattactttattaatgttt |
32194747 |
T |
|
| Q |
392 |
tagtttgaaatgccaattcgagataataaaacctttgtgacttcttgtacagagaaatttaaattagagaaaacaatatcgaatattgtttcgtagtgac |
491 |
Q |
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| |||||||||| ||||| ||||||||||||||||| ||| ||||||| || || || || |||||||||||||||||| |||||||||||||||| || |
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| T |
32194746 |
tggtttgaaatgacaatttgagataataaaacctttatgatttcttgtgcataggaa-ttcaattagagaaaacaatattgaatattgtttcgtagagat |
32194648 |
T |
|
| Q |
492 |
gatatttgacagttgatcactcattagaacataatgaacagaaaaaatgtcatacacaaatacaaccttagttatttgaatcagttagtgtaatatggta |
591 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32194647 |
gatatttgacagttgatcactcattagaacataatgaacagaaaaaatgtcatacacaaatacaaccttagttatttgaatcagttagtgtaatatggta |
32194548 |
T |
|
| Q |
592 |
ctatcatcatgatttcttcaaaagaatatattaggacaattcaatgagaaagaaaaattcaattgtatgatttaccatctatatgttgttatggcaggag |
691 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32194547 |
gtatcatcatgttttcttcaaaagaatatattaggacaattcaatgagaaagaaaaattcaattatatgatttaccatctatatgttgttatggcaggag |
32194448 |
T |
|
| Q |
692 |
ccttagg |
698 |
Q |
| |
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||||||| |
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| T |
32194447 |
ccttagg |
32194441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 28270862 - 28270933
Alignment:
| Q |
220 |
ttgcagtcaacttgataacaacaactttgatggaaataacattccagattcttatggcaacatgtcaaaatt |
291 |
Q |
| |
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|||||| |||||||| ||||| |||||||| ||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
28270862 |
ttgcagccaacttgacaacaataactttgaaggaaatagcattccagattcttatgccaacatgtcaaaatt |
28270933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 208 - 307
Target Start/End: Original strand, 28285844 - 28285943
Alignment:
| Q |
208 |
attttattgttcttgcagtcaacttgataacaacaactttgatggaaataacattccagattcttatggcaacatgtcaaaattattgaaactgtaagtg |
307 |
Q |
| |
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||||| ||||||||||||||||||||| ||||| ||||| || ||||||| |||||| ||| ||||| | ||||||||||||| ||||| |||||||| |
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| T |
28285844 |
attttcttgttcttgcagtcaacttgacaacaataacttcgaaggaaatagcattccggatacttatagtgacatgtcaaaattgttgaagttgtaagtg |
28285943 |
T |
|
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