View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17432_low_28 (Length: 245)
Name: NF17432_low_28
Description: NF17432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17432_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 18953952 - 18953734
Alignment:
| Q |
18 |
caaagctctgatgaattcccatcaagttgagtcacgggctggagtcctttacaatgaccttatcgaagaaatcctatcattccttgacgtgaagtctctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18953952 |
caaagctctgatgaattcccatcaagttgagtcacgggctggagtcctctacaatgaccttatcgaagaaatcctatcattccttgacgtgaagtctctt |
18953853 |
T |
|
| Q |
118 |
acgcgattcaagtgcgtctccaagtcatggaagactctcatatctgatcctactttcatcaaactccaccttaatcgatctgcaagaaacacacacctta |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
18953852 |
acgcgattcaagtgcgtctccaagtcatggaagactctcatatctgatcctactttcgtcaaactccaccttaatcgatctgcaagaaacacacacctta |
18953753 |
T |
|
| Q |
218 |
cattaatttatgatgatgt |
236 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
18953752 |
cattaatttatgatgatgt |
18953734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 18983999 - 18983781
Alignment:
| Q |
18 |
caaagctctgatgaattcccatcaagttgagtcacgggctggagtcctttacaatgaccttatcgaagaaatcctatcattccttgacgtgaagtctctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18983999 |
caaagctctgatgaattcccatcaagttgagtcacgggctggagtcctctacaatgaccttatcgaagaaatcctatcattccttgacgtgaagtctctt |
18983900 |
T |
|
| Q |
118 |
acgcgattcaagtgcgtctccaagtcatggaagactctcatatctgatcctactttcatcaaactccaccttaatcgatctgcaagaaacacacacctta |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
18983899 |
acgcgattcaagtgcgtctccaagtcatggaagactctcatatctgaccctactttcatcaaactccaccttaagcgatctgcaagaaacacacacctta |
18983800 |
T |
|
| Q |
218 |
cattaatttatgatgatgt |
236 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
18983799 |
cattaatttatgatgatgt |
18983781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 18988801 - 18988583
Alignment:
| Q |
18 |
caaagctctgatgaattcccatcaagttgagtcacgggctggagtcctttacaatgaccttatcgaagaaatcctatcattccttgacgtgaagtctctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18988801 |
caaagctctgatgaattcccatcaagttgagtcacgggctggagtcctctacaatgaccttatcgaagaaatcctatcattccttgacgtgaagtctctt |
18988702 |
T |
|
| Q |
118 |
acgcgattcaagtgcgtctccaagtcatggaagactctcatatctgatcctactttcatcaaactccaccttaatcgatctgcaagaaacacacacctta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
18988701 |
acgcgattcaagtgcgtctccaagtcatggaagactctcatatctgaccctactttcatcaaactccaccttaagcgatctgcaagaaacacacacctta |
18988602 |
T |
|
| Q |
218 |
cattaatttatgatgatgt |
236 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
18988601 |
cattaatttatgatgatgt |
18988583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 18998635 - 18998427
Alignment:
| Q |
18 |
caaagctctgatgaattcccatcaagttgagtcacgggctggagtcctttacaatgaccttatcgaagaaatcctatcattccttgacgtgaagtctctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18998635 |
caaagctctgatgaattcccatcaagttgagtcacgggctggagtcctctacaatgaccttatcgaagaaatcctatcattccttgacgtgaagtctctt |
18998536 |
T |
|
| Q |
118 |
acgcgattcaagtgcgtctccaagtcatggaagactctcatatctgatcctactttcatcaaactccaccttaatcgatctgcaagaaacacacacctta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
18998535 |
acgcgattcaagtgcgtctccaagtcatggaagactctcatatctgaccctactttcatcaaactccac----------ctgcaagaaacacacacctta |
18998446 |
T |
|
| Q |
218 |
cattaatttatgatgatgt |
236 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
18998445 |
cattaatttatgatgatgt |
18998427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 19598672 - 19598530
Alignment:
| Q |
71 |
atgaccttatcgaagaaatcctatcattccttgacgtgaagtctcttacgcgattcaagtgcgtctccaagtcatggaagactctcatatctgatcctac |
170 |
Q |
| |
|
|||| ||||||| |||||||||||||||||| || || |||||| || |||||| ||||||| |||||||||||| || || || ||| |||| || |
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| T |
19598672 |
atgaacttatcgttgaaatcctatcattccttcctgtaaattctcttgtgcaattcaaatgcgtctgcaagtcatggaaaaccctaatctctcatcccac |
19598573 |
T |
|
| Q |
171 |
tttcatcaaactccaccttaatcgatctgcaagaaacacacac |
213 |
Q |
| |
|
||| ||||||| ||||| || | |||||||||||||| |||| |
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|
| T |
19598572 |
ttttgtcaaactacacctcaagcaatctgcaagaaacaaacac |
19598530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 19610266 - 19610198
Alignment:
| Q |
106 |
gtgaagtctcttacgcgattcaagtgcgtctccaagtcatggaagactctcatatctgatcctactttc |
174 |
Q |
| |
|
||||| ||||| | |||||| |||||||||| |||||||||||| |||||||||| ||||| |||||| |
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| T |
19610266 |
gtgaaatctctgatgcgatttaagtgcgtctgcaagtcatggaaagctctcatatccgatcccactttc |
19610198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 36339294 - 36339365
Alignment:
| Q |
120 |
gcgattcaagtgcgtctccaagtcatggaagactctcatatctgatcctactttcatcaaactccaccttaa |
191 |
Q |
| |
|
|||||||||||| || |||||||||||| |||||||| || ||||| |||||||||||| | |||||||| |
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|
| T |
36339294 |
gcgattcaagtgtgtgagcaagtcatggaacactctcatctcagatccaactttcatcaaaatgcaccttaa |
36339365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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