View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17432_low_29 (Length: 243)
Name: NF17432_low_29
Description: NF17432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17432_low_29 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 71 - 243
Target Start/End: Complemental strand, 7585138 - 7584967
Alignment:
| Q |
71 |
ctaaccaataatagttagatgggccgggnnnnnnnnnnnncttctcccacttccggttcaagagttgcgatatatacttcctnnnnnnnnnggagttgcg |
170 |
Q |
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| T |
7585138 |
ctaaccaataatagttagatgggccgggtatatatatatacttctcccacttccggttcaagagttgcgatatatacttcctaaaaaaaa--gagttgcg |
7585041 |
T |
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| Q |
171 |
attatacttcctnnnnnnnn-gagtttaattaatatgcatgtagggttgggaattcgaataatttgaagctcat |
243 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7585040 |
attatacttcctaaaaaaaaagagtttaattaatatgcatgtagggttgggaattcgaataatttgaagctcat |
7584967 |
T |
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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 7584803 - 7584761
Alignment:
| Q |
201 |
aatatgcatgtagggttgggaattcgaataatttgaagctcat |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7584803 |
aatatgcatgtagggttgggaattcgaataatttgaagctcat |
7584761 |
T |
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