View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17432_low_33 (Length: 223)
Name: NF17432_low_33
Description: NF17432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17432_low_33 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 10944858 - 10945047
Alignment:
| Q |
14 |
aagaaaaaatgtacctgaaatggaagtgtgattcttcatttcctttgccatggctcatattatcacttcataatttatttttatgacagggatgtgagcg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10944858 |
aagaaaaaatgtacctgaaatggaagtgtgattcttcatttcctttgccatggctcatattatcacttcataatttatttttatgacaggcatgtgagcg |
10944957 |
T |
|
| Q |
114 |
atcttggacacatgacgacttctccgattggcataccttgctgttaatagcggcatccattaatgttcaatagcttaagagaggagggaa |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
10944958 |
atcttggacacatgacgacttctccgattggcatatcttgctgttaatagcggcttccattaatgttcaatagcttaagagagaagggaa |
10945047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 30 - 203
Target Start/End: Original strand, 10955150 - 10955324
Alignment:
| Q |
30 |
gaaatggaagtgtgattcttcatttcctttgccatggctcatattatcacttcataatttatttttatg-acagggatgtgagcgatcttggacacatga |
128 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||| || ||||||||| ||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
10955150 |
gaaatggaagtgggattcttaatttcctttgccatggctcatattaaca-ttcataattaatttttatggacagggatgtcagcgatcttggacacatga |
10955248 |
T |
|
| Q |
129 |
cgacttctccgattggcataccttgctgttaatagc-ggcatccattaatgttcaatagcttaagagaggagggaa |
203 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10955249 |
cgacttctcagattggcatacattgatgttaatagcgggcatccgttaatgttcaatagcttaagagaggagggaa |
10955324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 13398734 - 13398621
Alignment:
| Q |
53 |
ttcctttgccatggctcatattatcacttcataatttatttttatgacagggatgtgagcgatcttggacacatgacgacttctccgattggcatacctt |
152 |
Q |
| |
|
||||||| | |||||||||||| ||||| | ||||||||||| |||||||||||||| ||||||||||| |||| | ||||| | ||||||||||| |
|
|
| T |
13398734 |
ttcctttccgatggctcatattgtcactataccatttatttttacgacagggatgtgagagatcttggacaaatgatcatttctcttagtggcatacctt |
13398635 |
T |
|
| Q |
153 |
gctgttaatagcgg |
166 |
Q |
| |
|
| | |||| ||||| |
|
|
| T |
13398634 |
gattttaacagcgg |
13398621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 11778890 - 11778926
Alignment:
| Q |
86 |
atttatttttatgacagggatgtgagcgatcttggac |
122 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
11778890 |
atttatttctatgacagggatgtgagcgattttggac |
11778926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University