View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17432_low_4 (Length: 627)
Name: NF17432_low_4
Description: NF17432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17432_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 212 - 611
Target Start/End: Complemental strand, 41392166 - 41391766
Alignment:
| Q |
212 |
ggtccaattcaagaagaactagaaaggcaccgatccaccgagaaacgcgacgaggattccgcaaccctcttgtattgggttacaaggggtgcccggctat |
311 |
Q |
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| T |
41392166 |
ggtccaattcaagaagaactagaaaggcaccgatccaccgagaaacgcgacgaggattccgcaaccctcttgtattgggttacgaggggtgcccggctat |
41392067 |
T |
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| Q |
312 |
catctacatttgtctcaaagcaaccacccaagtgagtttgacacaacatttttatcagaaa-ccttaaggccaccacttttctaagcaatgtgagactta |
410 |
Q |
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| T |
41392066 |
catctacatttggctcaaagcaaccacccaagtgagtttgacacaacatttttatcagaaaaccttaaggccaccacttttctaagcaatgtgagactta |
41391967 |
T |
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| Q |
411 |
taacttagtaatgttcttagccgtatacaactgaacacgccgtctagacactttatcatgaagactttcgacacaaggagaagatcgaagaaccccggct |
510 |
Q |
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| T |
41391966 |
taacttagtaatgttcttaactgtatacaactgaacacgccgtctagacaccttatcatgaagactttcgacacaaggagaagatcgaagaaccccggct |
41391867 |
T |
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| Q |
511 |
ctgatatcaatgttgagtcacaagaggagcccgaatgatcatctacattaaacttaggacaatcatataaatgagttgatcataacattttcacccaaaa |
610 |
Q |
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| T |
41391866 |
ctgataccaatgttgagttacaagaggagcccgaatgatcatctacattaaacttaggacaatcgtataaatgagttgatcataacattttcacccaaaa |
41391767 |
T |
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| Q |
611 |
c |
611 |
Q |
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| T |
41391766 |
c |
41391766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 41392370 - 41392248
Alignment:
| Q |
9 |
caaaggaaatacaaaatgtacttcaacccattacaagggaagcagaaccnnnnnnnn-gaggtcacaaccaaaagagccgggtgtaaaaccatgcataga |
107 |
Q |
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| T |
41392370 |
caaaggaaatacaaaatgtacttcaacccattacaagggaagcagaaccaaaaaaaaagaggtcacaaccaaaagagccgggtggaaaaccatgcataga |
41392271 |
T |
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| Q |
108 |
acgacggagagaaaccacatagg |
130 |
Q |
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| T |
41392270 |
acgacggagagaaaccacatagg |
41392248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 541
Target Start/End: Complemental strand, 34544348 - 34544266
Alignment:
| Q |
461 |
ctttatcatgaagactttcgacacaaggagaaga--tcgaagaaccccggctctgatatcaatgttgagtcacaagaggagcc |
541 |
Q |
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| T |
34544348 |
ctttgtcaagaagactttcgacacaaggagaacacttcgttgaacctcggctctgataccaatgttgggtcacgaggggagcc |
34544266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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