View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17432_low_5 (Length: 608)
Name: NF17432_low_5
Description: NF17432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17432_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 12 - 329
Target Start/End: Complemental strand, 1952399 - 1952079
Alignment:
| Q |
12 |
attatactatgatctcaagatgagcattgctgctactttgttgattgtagtgctgaaatttggtcattataggctcgttgattgacat-----tgctgga |
106 |
Q |
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| T |
1952399 |
attatactatgatctcaagatgagcattgctgctactttgttgattgtagtgctgaaatttggtcattataggctcgttgattgacaaaattatcatgga |
1952300 |
T |
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| Q |
107 |
tttggtgaaaatttagnnnnnnnnnaaggggtgattttgcatttttattccctacacaaaatccacagagccaccaacgttaggatannnnnnnnnacaa |
206 |
Q |
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| T |
1952299 |
tttggtgaaaatttagtttttttttaaggggtgattttgcatttttattccctacacaaaatccacagagccaccaacgttaggattttttttacta--a |
1952202 |
T |
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| Q |
207 |
gattatgaaaaagattggtttttcatagatctgtcaactaaataccatgtgaaaaactacctcttgatttatttgcatttttatttagctagatcaaaaa |
306 |
Q |
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| T |
1952201 |
gattatgaaaaagattggtttttcatagatctgtcaactaaataccatgtgaaaaactacctcttgatttatttgcatctttatttagctagatcaaaaa |
1952102 |
T |
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| Q |
307 |
tattttgtatcaattgcatcttt |
329 |
Q |
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| T |
1952101 |
tattttgtatcaattgcatcttt |
1952079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 313 - 409
Target Start/End: Complemental strand, 1952062 - 1951966
Alignment:
| Q |
313 |
gtatcaattgcatctttatttcgccagattaaaaagattttgaatcaacaaacacaaaaatgttttgtgctttacttaaccatattagctattgatt |
409 |
Q |
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| T |
1952062 |
gtatcaattgcatctttatttcgccagatcaaaaagattttgaatcaacaaacacaaaaatgttttgtgctttacttaaccatattagctattgatt |
1951966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 512 - 592
Target Start/End: Complemental strand, 1951711 - 1951631
Alignment:
| Q |
512 |
tgttttggtcttattttataaataaatgaattataaaacttcaattcaatagtttggatttaggcatatgaagagtaatat |
592 |
Q |
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| T |
1951711 |
tgttttggtcttattttataaataaatgaattataaaacttcaattcaatagtttggatttaggcatatgaagagtaatat |
1951631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 390 - 458
Target Start/End: Complemental strand, 1951833 - 1951765
Alignment:
| Q |
390 |
aaccatattagctattgattgaaaatttcaccacatcaaacatatttatttgaagctttattttcaact |
458 |
Q |
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| T |
1951833 |
aaccatattagctattgattgaaaatttcaccacatcaaacatatttatttgaagctttattttcaact |
1951765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 258
Target Start/End: Original strand, 37102370 - 37102408
Alignment:
| Q |
220 |
attggtttttcatagatctgtcaactaaataccatgtga |
258 |
Q |
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| T |
37102370 |
attgttttttcatagatctatcaactaaataccatgtga |
37102408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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