View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17432_low_7 (Length: 512)

Name: NF17432_low_7
Description: NF17432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17432_low_7
NF17432_low_7
[»] chr6 (2 HSPs)
chr6 (23-498)||(33965911-33966390)
chr6 (46-116)||(1664186-1664254)
[»] chr5 (1 HSPs)
chr5 (26-88)||(38726683-38726745)
[»] chr2 (2 HSPs)
chr2 (34-88)||(13884800-13884854)
chr2 (34-88)||(14024925-14024979)
[»] chr1 (2 HSPs)
chr1 (26-99)||(28026911-28026983)
chr1 (39-99)||(33717229-33717289)
[»] chr4 (1 HSPs)
chr4 (46-102)||(38213593-38213649)
[»] chr3 (2 HSPs)
chr3 (58-152)||(54644122-54644216)
chr3 (60-153)||(30421648-30421741)
[»] chr8 (1 HSPs)
chr8 (39-88)||(11319460-11319509)


Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 23 - 498
Target Start/End: Original strand, 33965911 - 33966390
Alignment:
Q  23 ggctcaaaagaaaaatagatacgaaaaatacaaacagagaacacacgagatttgattatggagttcggtcaattgtgtctttgtctctgactaaatcgag 122  Q
    ||||| |||||||||| |||| |||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| ||||| |||| || |||    
T  33965911 ggctcgaaagaaaaatcgatatgaaaaatacaaacaaagaacacacaagatttgattgtggagttcggtcaattgtgtctttatctcttactacattgag 33966010  T
Q  123 gctacattgattttctattattcaagcttaagaatacgtattataaatgtttaaatactatcgttcagtttacaagattatccctgaatcataccattga 222  Q
    ||||||||||||||| |||||||||||||| |||||| |||||||| ||||| |||||||| ||| |||||||||||||||||||||||| |||||||||    
T  33966011 gctacattgattttcgattattcaagcttaggaatacatattataagtgttttaatactatagtttagtttacaagattatccctgaatcgtaccattga 33966110  T
Q  223 ggactccacgccaataagggtacnnnnnnnnntaac---taaatctttagtcaaagactaataatctgagaattctgatgatagaaactcacaaggaaaa 319  Q
    ||||||| | |||||||||||||          |||   ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  33966111 ggactccgcaccaataagggtacaaaaaaaaaaaacaactaaatctttagtcaaagactaataatctgagaattctaatgatagaaactcataaggaaaa 33966210  T
Q  320 aacacaagaagaaacaaa-gttgtctgtgtaatctctttccaacaacattttatgtgtaaactaaaaaacataacataataccaaatgcagacaaacacc 418  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33966211 aacacaagaagaaacaaaagttgtctgtgtaatctctttccaacaacattgtatgtgtaaactaaaaaacataacacaataccaaatgcagacaaacacc 33966310  T
Q  419 aaaattcatctctgacaaaaacaaacatcaaattattcaaaaatgttggctactcaatttggtccgacatcaaggttttt 498  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33966311 aaaattcatctctgacaaaaacaaacatcaagttattcaaaaatgttggctactcaatttggtccgacatcaaggttttt 33966390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 1664186 - 1664254
Alignment:
Q  46 aaaaatacaaacagagaacacacgagatttgattatggagttcggtcaattgtgtctttgtctctgactaa 116  Q
    |||||||||| ||||||| ||| |||||||||| ||||||||||| ||||||||||  |||||||||||||    
T  1664186 aaaaatacaatcagagaatacaagagatttgatcatggagttcggccaattgtgtc--tgtctctgactaa 1664254  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 38726683 - 38726745
Alignment:
Q  26 tcaaaagaaaaatagatacgaaaaatacaaacagagaacacacgagatttgattatggagttc 88  Q
    |||| ||||||| |||||||||| |  |||||||||||||||| ||||||||| |||||||||    
T  38726683 tcaatagaaaaacagatacgaaacacgcaaacagagaacacacaagatttgatcatggagttc 38726745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 13884800 - 13884854
Alignment:
Q  34 aaaatagatacgaaaaatacaaacagagaacacacgagatttgattatggagttc 88  Q
    |||||||||  ||||||| |||||| |||||| ||||||||||||||||||||||    
T  13884800 aaaatagatttgaaaaatgcaaacaaagaacatacgagatttgattatggagttc 13884854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 14024925 - 14024979
Alignment:
Q  34 aaaatagatacgaaaaatacaaacagagaacacacgagatttgattatggagttc 88  Q
    |||||||||  ||||||| |||||| |||||| ||||||||||||||||||||||    
T  14024925 aaaatagatttgaaaaatgcaaacaaagaacatacgagatttgattatggagttc 14024979  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 28026911 - 28026983
Alignment:
Q  26 tcaaaagaaaaatagatacgaaaaatacaaacagagaacacacgagatttgattatggagttcggtcaattgtg 99  Q
    ||||||| |||| |||||||||||| ||||| |||||||||| || |||||||  |||||||||| ||||||||    
T  28026911 tcaaaagtaaaa-agatacgaaaaacacaaatagagaacacaagatatttgatcgtggagttcggccaattgtg 28026983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 33717229 - 33717289
Alignment:
Q  39 agatacgaaaaatacaaacagagaacacacgagatttgattatggagttcggtcaattgtg 99  Q
    ||||||||||||| |||||||||||||||| ||||||||| | |||| |||  ||||||||    
T  33717229 agatacgaaaaatgcaaacagagaacacacaagatttgatcaaggagctcgaccaattgtg 33717289  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 38213593 - 38213649
Alignment:
Q  46 aaaaatacaaacagagaacacacgagatttgattatggagttcggtcaattgtgtct 102  Q
    |||||| |||||||| ||||| ||||||||||| |||| |||||| |||||||||||    
T  38213593 aaaaatgcaaacagaaaacactcgagatttgatcatggcgttcggccaattgtgtct 38213649  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 54644216 - 54644122
Alignment:
Q  58 agagaacacacgagatttgattatggagttcggtcaattgtgtctttgtctctgactaaatcgaggctacattgattttctattattcaagctta 152  Q
    ||||||||||| | ||||||| ||||| |||   |||||||| || |||||||||||  |  | |||| || |||||||||||||||||||||||    
T  54644216 agagaacacacaatatttgatcatggatttcaaccaattgtgcctatgtctctgactttagagtggctgcagtgattttctattattcaagctta 54644122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 153
Target Start/End: Complemental strand, 30421741 - 30421648
Alignment:
Q  60 agaacacacgagatttgattatggagttcggtcaattgtgtctttgtctctgactaaatcgaggctacattgattttctattattcaagcttaa 153  Q
    |||| |||||||||||||| || ||||| || |||||||| |   |||||| |||| || | || || | ||||||||||||||||||||||||    
T  30421741 agaaaacacgagatttgatcattgagtttggccaattgtgccaacgtctctaactacatggtggatatagtgattttctattattcaagcttaa 30421648  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 11319509 - 11319460
Alignment:
Q  39 agatacgaaaaatacaaacagagaacacacgagatttgattatggagttc 88  Q
    |||||||||||| |||| || ||||||||||||||||||| | |||||||    
T  11319509 agatacgaaaaacacaagcaaagaacacacgagatttgatcacggagttc 11319460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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