View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17432_low_8 (Length: 505)
Name: NF17432_low_8
Description: NF17432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17432_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 22 - 475
Target Start/End: Complemental strand, 22990322 - 22989869
Alignment:
| Q |
22 |
ggtgaattcgatggtaattatattatacttgttgcctatatgagttatgttgatgcatcattgccgcccaagcttccactagattatgttcagtctactc |
121 |
Q |
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| T |
22990322 |
ggtgaattcgatggtaattatattatacttgttgcctatatgagttatgttgatgcatccttgccacccgagcttcctccagattatgttcagtctactc |
22990223 |
T |
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| Q |
122 |
ttgaatattcagattcagatatcatggagggggagtcgcgaatctcacttaactgtcccataggattgacacgaatcaagactcctgttaaagggcgcac |
221 |
Q |
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| T |
22990222 |
ttgaatattcagattcagatatcatggagggggagtcgcgaatctcacttaactgtcccataggattgacacgaatcaagactcctgttaaagggcgcac |
22990123 |
T |
|
| Q |
222 |
atgcaaacacttccagtgtttcgattttgacaacttcattgaaataaattgtaacaggccgcactggcgctgtcgccattgcaatgagtatgtctcctat |
321 |
Q |
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| T |
22990122 |
atgcaaacacttccagtgcttcgattttgacaacttcattgaaataaattgttacaggccgctctggcgctgtccccattgcaatgagtatgtctcctat |
22990023 |
T |
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| Q |
322 |
acagatatttgtcttgacagaaacatggttgagatcctgaaaaaagttggtgagaatgttgtggaagtgattgtccatcatgctgatggatcgttgaagg |
421 |
Q |
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| T |
22990022 |
acagatatttgtcttgacagaaacatggttgagatcctgaaaaaagttggtgagaacgttgtggaagtgattgtccatcatgctgatggatcgttgaagg |
22989923 |
T |
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| Q |
422 |
aagtactcttagaagaaaatgattcctcgggtctcagaagccgcaacacaggtt |
475 |
Q |
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| T |
22989922 |
aagtactcttagaagaaaatgattcctcgggtctcagcagccgcaacacaggtt |
22989869 |
T |
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Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 2541553 - 2541660
Alignment:
| Q |
247 |
tttgacaacttcattgaaataaattgtaacaggccgcactggcgctgtcgccattgcaatgagtatgtctcctatacagatatttgtcttgacagaaaca |
346 |
Q |
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||||||||||||||| ||||||||| ||| ||||| ||||||||| | |||||||| | | ||||| ||||||||||||| ||||||||||||||| |
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| T |
2541553 |
tttgacaacttcattaaaataaattttaagaggccatcctggcgctgcccccattgcactcggcctgtctgctatacagatattcgtcttgacagaaaca |
2541652 |
T |
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| Q |
347 |
tggttgag |
354 |
Q |
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| T |
2541653 |
tgattgag |
2541660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 66
Target Start/End: Original strand, 2538281 - 2538309
Alignment:
| Q |
38 |
attatattatacttgttgcctatatgagt |
66 |
Q |
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| T |
2538281 |
attatattatacttgttgcctatatgagt |
2538309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 49515576 - 49515528
Alignment:
| Q |
31 |
gatggtaattatattatacttgttgcctatatgagttatgttgatgcat |
79 |
Q |
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|||||| ||||||||||||||||||| ||||||| |||||||| ||||| |
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| T |
49515576 |
gatggtcattatattatacttgttgcttatatgaattatgttgttgcat |
49515528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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