View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17433_high_1 (Length: 444)

Name: NF17433_high_1
Description: NF17433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17433_high_1
NF17433_high_1
[»] chr1 (3 HSPs)
chr1 (5-427)||(31321951-31322378)
chr1 (248-428)||(31321267-31321447)
chr1 (278-421)||(34650747-34650890)
[»] chr5 (6 HSPs)
chr5 (269-422)||(38997568-38997722)
chr5 (271-428)||(13163522-13163676)
chr5 (248-350)||(37498509-37498611)
chr5 (293-414)||(28803991-28804111)
chr5 (279-382)||(37497494-37497596)
chr5 (366-421)||(28804602-28804657)
[»] chr8 (5 HSPs)
chr8 (247-428)||(2687391-2687573)
chr8 (262-394)||(27824119-27824251)
chr8 (368-419)||(27823712-27823763)
chr8 (299-351)||(27166985-27167037)
chr8 (305-350)||(17097344-17097389)
[»] chr6 (1 HSPs)
chr6 (247-420)||(28636113-28636291)
[»] chr7 (6 HSPs)
chr7 (287-356)||(3697875-3697944)
chr7 (327-420)||(3704689-3704782)
chr7 (305-421)||(35711282-35711398)
chr7 (257-372)||(28686756-28686870)
chr7 (319-404)||(39705007-39705092)
chr7 (375-428)||(28099209-28099262)
[»] chr2 (5 HSPs)
chr2 (248-416)||(12028377-12028538)
chr2 (342-428)||(18160635-18160721)
chr2 (334-420)||(18160734-18160820)
chr2 (342-428)||(18159719-18159805)
chr2 (334-420)||(18308481-18308567)
[»] chr4 (9 HSPs)
chr4 (288-403)||(8332215-8332330)
chr4 (169-252)||(42602474-42602557)
chr4 (57-129)||(42602141-42602213)
chr4 (376-428)||(8331534-8331586)
chr4 (299-372)||(7500711-7500784)
chr4 (319-399)||(7491617-7491697)
chr4 (324-399)||(36139553-36139628)
chr4 (299-372)||(7492680-7492753)
chr4 (319-399)||(7499666-7499746)


Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 5 - 427
Target Start/End: Original strand, 31321951 - 31322378
Alignment:
Q  5 gatgtcgaagaatatatactatgtacagaggttgataaaataaaaccaatcaaaagcaagtgtttttgctccttccttctcctacttctgaacaccataa 104  Q
    |||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31321951 gatgtccaagaagatatactatgtacaggggttgataaaataaaaccaatcaaaagcaagtgtttttgctccttccttctcctacttctgaacaccataa 31322050  T
Q  105 ttatcacaagaatacatcttcaacataacacttttcctaat---ctccctatcaagcatctcctctatccaaccttgcctcaatttgttccacttattat 201  Q
    ||||||||| |||||||||||||||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  31322051 ttatcacaaaaatacatcttcaacataacacttttccttattatctccctatcaagcatctcctctatccaaccttgcctcaatttgttccacttattgt 31322150  T
Q  202 tctgccataacaacaattgtaggattggtgttacgaatgagaaccaaaaagaaccatacttttgtggaaatcatgagaattttacagttttatgatc--t 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |    
T  31322151 tctgccataacaacaattgtaggattggtgttacgaatgagaaccaaaaagaaccatgcttttgtggaaatcatgagaattttacagttttatgatctat 31322250  T
Q  300 atatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaaataaaggaagaaagacacgaagaagatgg 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31322251 atatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtgcgactaagataaaaataaaggaagaaagacacgaagaagatgg 31322350  T
Q  400 aagaaccaaggtttttaaattttaattt 427  Q
    ||||||||||||||||||||||||||||    
T  31322351 aagaaccaaggtttttaaattttaattt 31322378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 248 - 428
Target Start/End: Complemental strand, 31321447 - 31321267
Alignment:
Q  248 aaaagaaccatacttttgtggaaatcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggt 347  Q
    ||||||||||| |||||||| |||||| || ||||||| ||||||||||||||| |||||| || || ||||||||||||||||||||||| ||||||||    
T  31321447 aaaagaaccatgcttttgtgaaaatcacgaaaattttatagttttatgatctatctgtgaaattttaacagaaatggaggatatgggtagacgaaatggt 31321348  T
Q  348 gaaggtgtgggactaagataaaaataaaggaagaaagacacgaagaagatggaagaaccaaggtttttaaattttaatttt 428  Q
    ||||||||| | ||||||| |||||| ||||||||||||| ||| |||||||||| |||||||||||||||||||||||||    
T  31321347 gaaggtgtgcggctaagatgaaaatagaggaagaaagacaggaaaaagatggaaggaccaaggtttttaaattttaatttt 31321267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 278 - 421
Target Start/End: Complemental strand, 34650890 - 34650747
Alignment:
Q  278 gaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaaataaagg 377  Q
    ||||||||| || |||||||| || | ||||||| ||||||||||  ||| ||||||||||||||||||||||| ||||  ||||| ||||||||| ||     
T  34650890 gaattttacggtattatgatcaatctatgaatttttagcagaaataaagggtatgggtagaagaaatggtgaagatgtgcaactaaaataaaaatagaga 34650791  T
Q  378 aagaaagacacgaagaagatggaagaaccaaggtttttaaattt 421  Q
    |||||||||| |||  ||||| |||||||||| |||| ||||||    
T  34650790 aagaaagacatgaaatagatgtaagaaccaagattttaaaattt 34650747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 269 - 422
Target Start/End: Complemental strand, 38997722 - 38997568
Alignment:
Q  269 aaatcatgagaattttacagttttatgatctatatgtgaatttat-agcagaaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagata 367  Q
    |||||||  |||||| ||| ||||||||||||||||||| ||| | ||||||||| |||||||| |||||||||||||||||| ||||| |||||||||     
T  38997722 aaatcatcggaatttgacaattttatgatctatatgtgatttttttagcagaaatcgaggatataggtagaagaaatggtgaatgtgtgcgactaagatg 38997623  T
Q  368 aaaataaaggaagaaagacacgaagaagatggaagaaccaaggtttttaaatttt 422  Q
    |||||  ||||||||| ||| ||| ||||||||||||||||||||||||||||||    
T  38997622 aaaatggaggaagaaaaacaggaaaaagatggaagaaccaaggtttttaaatttt 38997568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 428
Target Start/End: Original strand, 13163522 - 13163676
Alignment:
Q  271 atcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaa 370  Q
    |||||| |||||||| ||||||||||||||||||||||||| ||||| | ||||||||||| ||||||| |||| ||||||||||| |  |||| | |||    
T  13163522 atcatgtgaattttaaagttttatgatctatatgtgaatttttagcaaatatggaggatataggtagaa-aaattgtgaaggtgtgcggttaagttgaaa 13163620  T
Q  371 ataaaggaagaaagacacgaagaagatggaagaaccaaggtttttaaattttaatttt 428  Q
    || |||||||||||||||| | ||| || |||||| ||| ||||||||||| ||||||    
T  13163621 atgaaggaagaaagacacg-ataag-tgaaagaactaagatttttaaatttgaatttt 13163676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 248 - 350
Target Start/End: Original strand, 37498509 - 37498611
Alignment:
Q  248 aaaagaaccatacttttgtggaaatcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggt 347  Q
    ||||||| |||  ||||||| |||||||| |||||||||||||||||||||||| ||||||||| ||||| |||||||||| || | |||||||||||||    
T  37498509 aaaagaagcatgtttttgtgaaaatcatgggaattttacagttttatgatctatttgtgaatttttagcataaatggaggacatagctagaagaaatggt 37498608  T
Q  348 gaa 350  Q
    |||    
T  37498609 gaa 37498611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 293 - 414
Target Start/End: Complemental strand, 28804111 - 28803991
Alignment:
Q  293 atgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaaataaaggaagaaagacacgaag 392  Q
    ||||||| | ||||||||| |  ||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||  | ||||||||| | |||     
T  28804111 atgatctctttgtgaatttttgacagaaatgg-ggatatgggtagaagaaatggtgaaggtgtgcgactaagatgaaaattgacgaagaaagataggaaa 28804013  T
Q  393 aagatggaagaaccaaggtttt 414  Q
    |||||||||||| |||||||||    
T  28804012 aagatggaagaatcaaggtttt 28803991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 382
Target Start/End: Complemental strand, 37497596 - 37497494
Alignment:
Q  279 aattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaaataaagga 378  Q
    |||||||| | ||||||||||||  ||||| || ||||| ||||||| ||||||| |||||||||||||||| |||||  |||||||| |||||  ||||    
T  37497596 aattttacggctttatgatctatcggtgaaatt-tagcataaatggatgatatggatagaagaaatggtgaaagtgtgcaactaagatgaaaatggagga 37497498  T
Q  379 agaa 382  Q
    ||||    
T  37497497 agaa 37497494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 421
Target Start/End: Original strand, 28804602 - 28804657
Alignment:
Q  366 taaaaataaaggaagaaagacacgaagaagatggaagaaccaaggtttttaaattt 421  Q
    |||||||  |||||||||||||  |||||||||||||||| ||| |||||||||||    
T  28804602 taaaaatggaggaagaaagacaaaaagaagatggaagaactaagatttttaaattt 28804657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 247 - 428
Target Start/End: Complemental strand, 2687573 - 2687391
Alignment:
Q  247 aaaaagaaccatactttt-gtggaaatcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatg 345  Q
    |||||||||||| ||||| ||| |||||||| |||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||    |||||    
T  2687573 aaaaagaaccatgctttttgtgaaaatcatgggaattttacagttttatgatctatgtatgaatttttagcagaaatggaggatatgggtattgaaaatg 2687474  T
Q  346 gtgaaggtgtgggactaagataaaaataaaggaagaaagacacgaagaagatggaagaa-ccaaggtttttaaattttaatttt 428  Q
    ||||||||||| | ||||||| |||||  | ||||||||||  |||| |||| ||| || ||||||||||||||||| ||||||    
T  2687473 gtgaaggtgtgcggctaagatgaaaatggaagaagaaagaccggaag-agattgaaaaacccaaggtttttaaatttgaatttt 2687391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 262 - 394
Target Start/End: Original strand, 27824119 - 27824251
Alignment:
Q  262 tttgtggaaatcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtgggact 361  Q
    ||||| || ||||||||||||||| ||| ||||||||||| |||||||||  || |||| | || |||||| |||||| |||||||||| ||||| | |     
T  27824119 tttgtagatatcatgagaattttaaagtattatgatctatttgtgaattttcagtagaattcgaagatatgagtagaataaatggtgaatgtgtgcggca 27824218  T
Q  362 aagataaaaataaaggaagaaagacacgaagaa 394  Q
    |||||||||||  ||||| ||||||| ||||||    
T  27824219 aagataaaaatggaggaaaaaagacatgaagaa 27824251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 368 - 419
Target Start/End: Complemental strand, 27823763 - 27823712
Alignment:
Q  368 aaaataaaggaagaaagacacgaagaagatggaagaaccaaggtttttaaat 419  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  27823763 aaaatgaaggaagaaagacaagaagaagatggaagaaccaaggtttttaaat 27823712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 27166985 - 27167037
Alignment:
Q  299 tatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaag 351  Q
    ||||| ||||||| ||||| ||||||| |||||||||||||||||||||||||    
T  27166985 tatatatgaatttttagcataaatggaagatatgggtagaagaaatggtgaag 27167037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 17097389 - 17097344
Alignment:
Q  305 tgaatttatagcagaaatggaggatatgggtagaagaaatggtgaa 350  Q
    ||||||| |||||  |||||||||||||||||||||||||| ||||    
T  17097389 tgaatttttagcatgaatggaggatatgggtagaagaaatgttgaa 17097344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 247 - 420
Target Start/End: Original strand, 28636113 - 28636291
Alignment:
Q  247 aaaaagaaccatacttttgtggaaatcatgagaattttacagttttatgatctatatg--tgaatttatagcagaaatggaggatatgggtagaagaaat 344  Q
    ||||| ||| |||||||||||||||||||| |||||||| ||||||||||| ||| |   |   ||| ||||| ||||||||||| |||||| |||||||    
T  28636113 aaaaaaaactatacttttgtggaaatcatgggaattttatagttttatgatttatgttattttttttttagcaaaaatggaggat-tgggtaaaagaaat 28636211  T
Q  345 ggtgaaggtgtgggactaagataaaaataaaggaagaaagac----acgaagaagatggaagaaccaaggtttttaaatt 420  Q
    |||||||||||| ||||||||| |||||  ||||||||| ||    | |||||||||| || |||||| |||||||||||    
T  28636212 ggtgaaggtgtgagactaagatgaaaatggaggaagaaatacatatatgaagaagatgaaataaccaatgtttttaaatt 28636291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 3697944 - 3697875
Alignment:
Q  287 agttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtg 356  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||||||||||||| |||| |||||||||||    
T  3697944 agttttatgatctatctgtgaatttttagcagaaatggacgatatgggtagaataaatagtgaaggtgtg 3697875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 327 - 420
Target Start/End: Complemental strand, 3704782 - 3704689
Alignment:
Q  327 gatatgggtagaagaaatggtgaaggtgtgggactaagataaaaataaaggaagaaagacacgaagaagatggaagaaccaaggtttttaaatt 420  Q
    ||||||||||||||||||| ||||||||||  ||||||    ||||  ||||||||||||| ||||||||||||||| |||| |||||||||||    
T  3704782 gatatgggtagaagaaatgctgaaggtgtgcaactaagggggaaatggaggaagaaagacatgaagaagatggaagagccaatgtttttaaatt 3704689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 421
Target Start/End: Original strand, 35711282 - 35711398
Alignment:
Q  305 tgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaaataaaggaagaaagacacgaagaagatggaagaa 404  Q
    ||||||| |||||||||||||||| |||| ||||||||| ||||||||| ||    |||| | ||||   ||||||||||||| |||||||||||||| |    
T  35711282 tgaatttttagcagaaatggaggaaatggatagaagaaacggtgaaggtatgcaggtaagttgaaaagggaggaagaaagacatgaagaagatggaagga 35711381  T
Q  405 ccaaggtttttaaattt 421  Q
    | || ||||||||||||    
T  35711382 caaaagtttttaaattt 35711398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 257 - 372
Target Start/End: Complemental strand, 28686870 - 28686756
Alignment:
Q  257 atacttttgtggaaatcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtg 356  Q
    ||||||||| ||||||||||  |||||||||||||||||||| || || ||||||  |||  |||||| ||||||| ||||||| |||| ||||||||||    
T  28686870 atacttttgaggaaatcatggaaattttacagttttatgatccatctgcgaattttcagctaaaatgggggatatgagtagaag-aatgatgaaggtgtg 28686772  T
Q  357 ggactaagataaaaat 372  Q
       |||||||||||||    
T  28686771 ctgctaagataaaaat 28686756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 404
Target Start/End: Original strand, 39705007 - 39705092
Alignment:
Q  319 aaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaaataaaggaagaaagacacgaagaagatggaagaa 404  Q
    |||||||| ||||||||| |||||||||||||  |||| | | ||||| |||||   |||||||||||| ||||| ||||||||||    
T  39705007 aaatggagaatatgggtataagaaatggtgaatatgtgcggccaagatgaaaatggtggaagaaagacatgaagaggatggaagaa 39705092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 428
Target Start/End: Complemental strand, 28099262 - 28099209
Alignment:
Q  375 aggaagaaagacacgaagaagatggaagaaccaaggtttttaaattttaatttt 428  Q
    ||||||||||||| ||||||||||||| ||  || |||||||||||| ||||||    
T  28099262 aggaagaaagacaagaagaagatggaaaaataaaagtttttaaatttgaatttt 28099209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 248 - 416
Target Start/End: Complemental strand, 12028538 - 12028377
Alignment:
Q  248 aaaagaaccatacttttgtggaaatcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggt 347  Q
    |||||||||||  |||||||||||||||  ||||||||||      |||||||| ||| ||||| ||||||||||||||||||||  || |||||||  |    
T  12028538 aaaagaaccatgtttttgtggaaatcatatgaattttaca------tgatctatttgtaaatttttagcagaaatggaggatatgtttataagaaataat 12028445  T
Q  348 gaaggtgtgggactaagataaaaataaaggaagaaagacacgaagaagatggaagaaccaaggttttta 416  Q
     |||||||| | ||||||| |||||  | | ||||||||| |||||||||||||||| ||| |||||||    
T  12028444 aaaggtgtgcggctaagatgaaaatgga-gtagaaagacatgaagaagatggaagaaacaatgttttta 12028377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 428
Target Start/End: Complemental strand, 18160721 - 18160635
Alignment:
Q  342 aatggtgaaggtgtgggactaagataaaaataaaggaagaaagacacgaagaagatggaagaaccaaggtttttaaattttaatttt 428  Q
    ||||||||||||||| |||||  || |||||   |||||||||||| ||||| ||||||||||||||   |||||||||| ||||||    
T  18160721 aatggtgaaggtgtgcgactacaatgaaaatggtggaagaaagacaggaagatgatggaagaaccaaaaattttaaatttgaatttt 18160635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 420
Target Start/End: Original strand, 18160734 - 18160820
Alignment:
Q  334 gtagaagaaatggtgaaggtgtgggactaagataaaaataaaggaagaaagacacgaagaagatggaagaaccaaggtttttaaatt 420  Q
    |||||||||||||||||| |||| | ||||||| |||||   |||| ||||| | |||||||||||||||||| |  ||||||||||    
T  18160734 gtagaagaaatggtgaagatgtgcggctaagatgaaaatggtggaaaaaagataggaagaagatggaagaaccgaaatttttaaatt 18160820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 428
Target Start/End: Complemental strand, 18159805 - 18159719
Alignment:
Q  342 aatggtgaaggtgtgggactaagataaaaataaaggaagaaagacacgaagaagatggaagaaccaaggtttttaaattttaatttt 428  Q
    ||||||||||||||| |||||  || |||||   |||||||||| | ||||| ||||||||||||||   |||||||||| ||||||    
T  18159805 aatggtgaaggtgtgcgactacaatgaaaatggtggaagaaagataggaagatgatggaagaaccaaaaattttaaatttgaatttt 18159719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 420
Target Start/End: Complemental strand, 18308567 - 18308481
Alignment:
Q  334 gtagaagaaatggtgaaggtgtgggactaagataaaaataaaggaagaaagacacgaagaagatggaagaaccaaggtttttaaatt 420  Q
    |||||||||||||| ||| ||||   ||||||| |||||   |||||||||| | |||||||||||||||||| |  ||||||||||    
T  18308567 gtagaagaaatggtaaagatgtgcagctaagatgaaaatggtggaagaaagataggaagaagatggaagaaccgaaatttttaaatt 18308481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 288 - 403
Target Start/End: Original strand, 8332215 - 8332330
Alignment:
Q  288 gttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaaataaaggaagaaagaca 387  Q
    |||||||||  ||| ||||||||| ||||||||||||  ||||||| ||||||||||| |||| ||||| | ||||||| |||||| ||||||||| |      
T  8332215 gttttatgacatatttgtgaatttttagcagaaatggtcgatatggatagaagaaatgatgaaagtgtgtggctaagatgaaaatagaggaagaaaaatt 8332314  T
Q  388 cgaagaagatggaaga 403  Q
     |||||||||||||||    
T  8332315 ggaagaagatggaaga 8332330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 169 - 252
Target Start/End: Original strand, 42602474 - 42602557
Alignment:
Q  169 tccaaccttgcctcaatttgttccacttattattctgccataacaacaattgtaggattggtgttacgaatgagaaccaaaaag 252  Q
    ||||||||||||||| | |||||| ||| ||  |||||||||||||||||||||||||||||| ||||||||||  ||||||||    
T  42602474 tccaaccttgcctcattgtgttccgcttcttgctctgccataacaacaattgtaggattggtgctacgaatgaggcccaaaaag 42602557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 42602141 - 42602213
Alignment:
Q  57 aaagcaagtgtttttgctccttccttctcctacttctgaacaccataattatcacaagaatacatcttcaaca 129  Q
    |||| ||||| | |||||||||||| ||||| |||||||||||  |||||||||||||||||||| |||||||    
T  42602141 aaagtaagtgctgttgctccttcctgctcctgcttctgaacactgtaattatcacaagaatacattttcaaca 42602213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 428
Target Start/End: Complemental strand, 8331586 - 8331534
Alignment:
Q  376 ggaagaaagacacgaagaagatggaagaaccaaggtttttaaattttaatttt 428  Q
    ||||||||||||  ||||||||||||||||||| |||||||||||| ||||||    
T  8331586 ggaagaaagacaacaagaagatggaagaaccaaagtttttaaatttgaatttt 8331534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 372
Target Start/End: Original strand, 7500711 - 7500784
Alignment:
Q  299 tatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaaat 372  Q
    |||||||| |||| |||||  ||||||||||||||||||||||||| |||||  |||| | ||||||| |||||    
T  7500711 tatatgtggatttttagcatgaatggaggatatgggtagaagaaatagtgaatatgtgcggctaagatgaaaat 7500784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 399
Target Start/End: Complemental strand, 7491697 - 7491617
Alignment:
Q  319 aaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaaataaaggaagaaagacacgaagaagatgg 399  Q
    ||||| |||||||||||||||||||  |||||  |||| ||||||||| |||||   |||||||||| | |||||||||||    
T  7491697 aaatgaaggatatgggtagaagaaactgtgaatatgtgcgactaagatgaaaatggtggaagaaagatatgaagaagatgg 7491617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 36139553 - 36139628
Alignment:
Q  324 gaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaaataaaggaagaaagacacgaagaagatgg 399  Q
    |||||||| | | ||||||||||||||  |||| ||||||||| |||||   |||||||||||| |||||||||||    
T  36139553 gaggatatagattgaagaaatggtgaatatgtgcgactaagattaaaatggtggaagaaagacatgaagaagatgg 36139628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 372
Target Start/End: Original strand, 7492680 - 7492753
Alignment:
Q  299 tatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaaat 372  Q
    |||||||| | || |||||  ||||||||||||||||||||||||| |||||  |||| | ||||||| |||||    
T  7492680 tatatgtggagttttagcatgaatggaggatatgggtagaagaaatagtgaatatgtgcggctaagatgaaaat 7492753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 399
Target Start/End: Complemental strand, 7499746 - 7499666
Alignment:
Q  319 aaatggaggatatgggtagaagaaatggtgaaggtgtgggactaagataaaaataaaggaagaaagacacgaagaagatgg 399  Q
    ||||| |||||||||||||||||||  |||||  |||| | || |||| |||||   |||||||||||| |||||||||||    
T  7499746 aaatgaaggatatgggtagaagaaactgtgaatatgtgtggcttagatgaaaatggtggaagaaagacatgaagaagatgg 7499666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University