View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17433_high_3 (Length: 241)
Name: NF17433_high_3
Description: NF17433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17433_high_3 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 4775728 - 4775488
Alignment:
| Q |
1 |
tgccatagattatcattttgttcgcgatctcgttgccgccaagaagcttcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttctaacaaag |
100 |
Q |
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| T |
4775728 |
tgccatagattatcattttgttcgcgatctcgttgccgccaagaagcttcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttctaacaaag |
4775629 |
T |
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| Q |
101 |
ccgttatcctcggtacggcatcacttccttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagtattaacttaagcat |
200 |
Q |
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| T |
4775628 |
ccgttatcctcggtacggcatcacttccttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagtattaacttaagcat |
4775529 |
T |
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| Q |
201 |
tgaccaaatcaaagaataatggttgtaataatatccgtaaa |
241 |
Q |
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| T |
4775528 |
tgaccaaatcaaagaataatggttgtaataatatctgtaaa |
4775488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 43061089 - 43060846
Alignment:
| Q |
1 |
tgccatagattatcattttgttcgcgatctcgttgccgc---caagaagcttcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttctaaca |
97 |
Q |
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| T |
43061089 |
tgccatagattatcattttgtttgcgatctcgttgctgctgccaagaagcttcaagtttcacatgtcccaacaagtcatcagctacccgatcttctcaca |
43060990 |
T |
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| Q |
98 |
aagccgttatcctcggtacggcatcacttccttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagtattaacttaag |
197 |
Q |
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| T |
43060989 |
aagccgttatcctcggtacgacatcacttccttaaagacaagattggagttattgatgatacctccatcttgagcgggcgtgtaggagtattaacttaag |
43060890 |
T |
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| Q |
198 |
cattgaccaaatcaaagaataatggttgtaataatatccgtaaa |
241 |
Q |
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| T |
43060889 |
catttaccaaatcaaataacaatggttgtaatgatatcagtaaa |
43060846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 448677 - 448611
Alignment:
| Q |
178 |
tgtaggagtattaacttaa---gcattgaccaaatcaaagaataatggttgtaataatatccgtaaa |
241 |
Q |
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| T |
448677 |
tgtaggagtattaacttaattagcattgaccaaatcaaataatgatgggtgtaataatatcagtaaa |
448611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 42019520 - 42019449
Alignment:
| Q |
125 |
ttccttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagtattaacttaa |
196 |
Q |
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| T |
42019520 |
ttccttaaagacaagattggagttcttgaagataactccattttcagggggagtaaaggagtatttacttaa |
42019449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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