View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17433_high_4 (Length: 229)
Name: NF17433_high_4
Description: NF17433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17433_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 35520662 - 35520461
Alignment:
| Q |
12 |
gaagaaaatattactttgcgaatgctgcaaaaataatgaaaatcaatttcacctttaagattactaggagtatatagttcaaacaactccacaactcgaa |
111 |
Q |
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| T |
35520662 |
gaagaaaagattactttgcgaatgctgcaaaaataatgaaaatcaatttcacctttaagattactaggagtatatagttcaaacaactccacaactcgaa |
35520563 |
T |
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| Q |
112 |
agttcatcaaattcaaaactttgtttatagtctccatagttcggagtctctggttagtgaagaaatcaaggagataaagtttggaagaacttgacagaaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35520562 |
agttcatcaaattcaaaactttgtttatagtctccatagttcggagtctctggttagtgaagagatcaaggagataaagtttggaagaacttgacagaaa |
35520463 |
T |
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| Q |
212 |
aa |
213 |
Q |
| |
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|| |
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| T |
35520462 |
aa |
35520461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 38813794 - 38813848
Alignment:
| Q |
79 |
gagtatatagttcaaacaactccacaactcgaaagttcatcaaattcaaaacttt |
133 |
Q |
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||||||||| |||| ||||||| |||||||||||||||||||||| ||||||||| |
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| T |
38813794 |
gagtatatacttcagacaactcaacaactcgaaagttcatcaaatccaaaacttt |
38813848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 38825658 - 38825712
Alignment:
| Q |
79 |
gagtatatagttcaaacaactccacaactcgaaagttcatcaaattcaaaacttt |
133 |
Q |
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|||| |||||||||||||||||||||||| ||| ||||||||||||||| ||||| |
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| T |
38825658 |
gagtgtatagttcaaacaactccacaacttgaatgttcatcaaattcaacacttt |
38825712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 35549061 - 35549115
Alignment:
| Q |
79 |
gagtatatagttcaaacaactccacaactcgaaagttcatcaaattcaaaacttt |
133 |
Q |
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|||||||| ||||||||||||||||| |||| |||||||||||||||| ||||| |
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| T |
35549061 |
gagtatatccttcaaacaactccacaaatcgatagttcatcaaattcaatacttt |
35549115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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