View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17433_low_2 (Length: 427)
Name: NF17433_low_2
Description: NF17433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17433_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 19 - 346
Target Start/End: Original strand, 42821415 - 42821747
Alignment:
| Q |
19 |
tataattgaaatgtgaacttaatagtgtaattaaatgtaaaaaaga-taattctttgagtcaataaagttcaactttttgtaagaattttatcttacata |
117 |
Q |
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| T |
42821415 |
tataattgaaatgtgaacttaatagtgtaattaaatgtaaaaaagaataattctctgagtcaatacagttcaactttttgtaagaattttatcttacata |
42821514 |
T |
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| Q |
118 |
tgaaatatt-----gtattggtgacaaagttcataattgtacgagtttatgagtctaagagacaaaaatgaggggaattgcgcattaaatcattttcatg |
212 |
Q |
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| T |
42821515 |
tgaaatattgtattgtattggtgacaaagttcataattgtacgagtttatgagtctaagagacaaaaatgaggggaattacgcattaaatcattttcatg |
42821614 |
T |
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| Q |
213 |
gtaaacttgataaaatagtggcagacctnnnnnnnngttaagagttcgtgcaaatgagatgtgagacttatggggtgccaacataattgaaatgcatagc |
312 |
Q |
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| T |
42821615 |
gtaaactcgataaaatagtggtagacctaaaaaaaaatt-agagttcttgcaaatgatatgtgagacttatggggtgccaacataattgaaatgcatagc |
42821713 |
T |
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| Q |
313 |
tttcacaccatgttttaatagtctattcatttat |
346 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
42821714 |
tttcacactatgttttaatagtctattcatttat |
42821747 |
T |
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