View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17433_low_3 (Length: 273)
Name: NF17433_low_3
Description: NF17433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17433_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 1329014 - 1328904
Alignment:
| Q |
13 |
aacctgtggggcgacaagctaaaaagcgttcaagaagcaattgcaaatgctgcattttggaaaaaatttgctctaacttcatttcacgcactggtgtgga |
112 |
Q |
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| T |
1329014 |
aacctgtggggcgacaagctaaaaagcgttcaagaagcaattgcaaatgctgcattttggaaaaaatttgctctaacttcatttcacgcactggtgtgga |
1328915 |
T |
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| Q |
113 |
tcttacaacga |
123 |
Q |
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| T |
1328914 |
tcttacaacga |
1328904 |
T |
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Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 188 - 257
Target Start/End: Complemental strand, 1328821 - 1328752
Alignment:
| Q |
188 |
gtcataaccaaacatgctacgctttccacgccgaccttgcaccttgtactcaagcctctcatccaaatat |
257 |
Q |
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| T |
1328821 |
gtcataaccaaacatgctacgctttccacgccgactttgcatcttgtactcaagcctctcatccaaatat |
1328752 |
T |
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