View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_high_10 (Length: 464)
Name: NF17434_high_10
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_high_10 |
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| [»] scaffold0198 (1 HSPs) |
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Alignment Details
Target: scaffold0198 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 7 - 445
Target Start/End: Complemental strand, 4422 - 3985
Alignment:
| Q |
7 |
gtgagatgaaattgataggtttcatgttggtagcacaatcgattttgctagaaattcaactgcatcaaaggaagggagctcagttgaagacacggggcga |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4422 |
gtgatatgaaattgataggtttcatgttggtagcacaatcgattctgctagaaattcaacagcatcaaaggaagggagctcagttgaagacacggggcga |
4323 |
T |
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| Q |
107 |
cgtgcacgctacttgtacatgatgcgcagcttccagcagatggtatcacaattttcttcactatttgttctatttcacttcaccaaaaatgtccgtaatg |
206 |
Q |
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| T |
4322 |
cgtacacgctacttgtacatgatgcgcagcttccagcagatggtatcataattttcttcactatttgttctatttcacttcaccaaaa-tgtccgtagtg |
4224 |
T |
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| Q |
207 |
actattcctcaattgatgatttgatacatcttgtaaaaagtatagcacgactacaaagttgtctagttaggatgaattcaatctggttcaaaggccttca |
306 |
Q |
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| T |
4223 |
actattcctcaattgatgacttgatacatcttgtaaaaattatagcacgattacaaagttgtctagttaggatgaattcaatctggttcaaaggccttca |
4124 |
T |
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| Q |
307 |
atgcggtccttgattgtcttgctagtttcttcaactcgttactaaacttatcaaaaacatactaattttgacactaaaatattgttatgataggatgtca |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||| ||| ||||| |
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| T |
4123 |
atgcggtccttgattgtcttgctagtttcttcaactcgttactaaacttatctaaaacatgctaaatttgacactaaaatattgttatgacagggtgtca |
4024 |
T |
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| Q |
407 |
tcatcacaaccccaaacttaaaccctttccagtcctcaa |
445 |
Q |
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| T |
4023 |
tcatcacaaccccaaacttgaaccctttctagtcctcaa |
3985 |
T |
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Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 16401317 - 16401247
Alignment:
| Q |
13 |
tgaaattgataggtttcatgttggtagcacaatcgattttgctagaaattcaactgcatcaaaggaaggga |
83 |
Q |
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| T |
16401317 |
tgaaatcgataggtttcatgttggtagcacaattgattctgctagaaattcaactgcatcaaaggaaggga |
16401247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 33870628 - 33870595
Alignment:
| Q |
237 |
ttgtaaaaagtatagcacgactacaaagttgtct |
270 |
Q |
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| T |
33870628 |
ttgtaaaaagtatagcacgaccacaaagttgtct |
33870595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 14305628 - 14305698
Alignment:
| Q |
13 |
tgaaattgataggtttcatgttggtagcacaatcgattttgctagaaattcaactgcatcaaaggaaggga |
83 |
Q |
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| T |
14305628 |
tgaaattgataggtttcatgttggtagcacaactgattctgctagaaattcaactgcttcaaaggaaggga |
14305698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 8988099 - 8988023
Alignment:
| Q |
230 |
atacatcttgtaaaaagtatagcacgactacaaagttgtctagttaggatgaattcaatctggttcaaaggccttca |
306 |
Q |
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| T |
8988099 |
atacatattgtaaaaagtataccatgaccatgaaattgtcttgttagggtgaattcgatctgattcaaaggtcttca |
8988023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 37087030 - 37086976
Alignment:
| Q |
227 |
ttgatacatcttgtaaaaagtatagcacgactacaaagttgtctagttaggatga |
281 |
Q |
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| T |
37087030 |
ttgatacatcttgtaaaaaatatagcatgacaacaaagttgtttggttaggatga |
37086976 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 2570365 - 2570320
Alignment:
| Q |
236 |
cttgtaaaaagtatagcacgactacaaagttgtctagttaggatga |
281 |
Q |
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| T |
2570365 |
cttgtaaaaagtatagcatgaccacaaagttgtctagtttggatga |
2570320 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 6723941 - 6723909
Alignment:
| Q |
228 |
tgatacatcttgtaaaaagtatagcacgactac |
260 |
Q |
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| T |
6723941 |
tgatacatcttgttaaaagtatagcacgactac |
6723909 |
T |
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