View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17434_high_14 (Length: 433)
Name: NF17434_high_14
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 17387313 - 17386898
Alignment:
| Q |
1 |
ccatgcaacagtttgtgagttttgtttgtaaggaagaatatgttcatggtggctaatatttctagacactaaaatctctttgttattaatgtcaagcagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17387313 |
ccatgcaacagtttgtgagttttgtttgtaaggaagaatatgttcatggtggctaatatttctagacactaaaatctctttgttattaatgtcaagcagt |
17387214 |
T |
|
| Q |
101 |
acagcaccttttactccagctttatagcctnnnnnnntacattttcttgctctaggagtaagtttagtcctatgtgacaataaagtgaaagcaaaaacta |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
17387213 |
actgcaccttttactccagctttatagcctaaaaaaatacattttcttgctctatgagtaagtttagtcctatgtgacaataaagtggaagcaaaaacta |
17387114 |
T |
|
| Q |
201 |
aagatccaaaaacttttaaagtatgcaagttaggcaaggtgccttttaacaaaaaatatggagaataattttgaagtacaggactagatactctatttat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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|
| T |
17387113 |
aagatccaaaaacttttaaagtatgcaagtcaggcaatgtgccttttaacaaaaaatatggagaatgattttgaagtacaggactaggtactctatttat |
17387014 |
T |
|
| Q |
301 |
aatgaacacagcatgagaaacagcatatgaccagaaattttttggtaaatttgattgaattaataatgctcttcctacattcaaaatatgttgatgtttt |
400 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17387013 |
aatgaacacaacatgagaaacagcatatgactagaaatgttttggtaaatttgattgaattaataatgctcttcctacattcaaaatatgttgatgtttt |
17386914 |
T |
|
| Q |
401 |
ctctctacccttccat |
416 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
17386913 |
ctctctacccttccat |
17386898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 15537583 - 15537167
Alignment:
| Q |
1 |
ccatgcaacagtttgtgagttttgtttgtaaggaagaatatgttcatggtggctaatatttctagacactaaaatctctttgttattaatgtcaagcagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
15537583 |
ccatgcaacagtttgtgagttttgtttgtaaggaagaatatgttcatggtggctaatatttctagacactaaaatctctttgttattaatgtcaaacagt |
15537484 |
T |
|
| Q |
101 |
acagcacctttt-actccagctttatagcctnnnnnnntacattttcttgctctaggagtaagtttagtcctatgtgacaataaagtgaaagcaaaaact |
199 |
Q |
| |
|
|| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||| |
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|
| T |
15537483 |
actgcacctttttactccagctttatagcctaaaaaaatacattttcttgctctaggagtaagattaatcctatgtgacaataaagtggaagcaaaaact |
15537384 |
T |
|
| Q |
200 |
aaagatccaaaaacttttaaagtatgcaagttaggcaaggtgccttttaacaaaaaatatggagaataattttgaagtacaggactagatactctattta |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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|
| T |
15537383 |
aaagatccaaaaacttttaaagtatgcaagtcaggcaatgtgccttttaacaaaaaatatggagaatgattttgaagtacaggactaggtactctattta |
15537284 |
T |
|
| Q |
300 |
taatgaacacagcatgagaaacagcatatgaccagaaattttttggtaaatttgattgaattaataatgctcttcctacattcaaaatatgttgatgttt |
399 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15537283 |
taatgaacacagtatgagaaacatcatatgaccaaaaatgttttggtaaatttgattgaattaataatgctcttcctacattcaaaatatgttgatgttt |
15537184 |
T |
|
| Q |
400 |
tctctctacccttccat |
416 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
15537183 |
tctctctacccttccat |
15537167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 27036126 - 27036191
Alignment:
| Q |
343 |
tggtaaatttgattgaattaataatgctcttcctacattcaaaatatgttgatgttttctctctac |
408 |
Q |
| |
|
|||||| |||||||||| |||||| ||||| || ||||| | |||||| ||||||||||||||||| |
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|
| T |
27036126 |
tggtaattttgattgaaataataaagctctgccaacattgagaatatgctgatgttttctctctac |
27036191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 408
Target Start/End: Complemental strand, 35087515 - 35087460
Alignment:
| Q |
353 |
gattgaattaataatgctcttcctacattcaaaatatgttgatgttttctctctac |
408 |
Q |
| |
|
||||||| |||||| ||||| || ||||| | |||||||||||||||||||||||| |
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|
| T |
35087515 |
gattgaaataataaagctctgccaacattgagaatatgttgatgttttctctctac |
35087460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 416
Target Start/End: Complemental strand, 22643673 - 22643601
Alignment:
| Q |
344 |
ggtaaatttgattgaattaataatgctcttcctacattcaaaatatgttgatgttttctctctacccttccat |
416 |
Q |
| |
|
||||| |||||||||| ||| || ||||| | |||||||||||||||||||| ||||| || ||||| |||| |
|
|
| T |
22643673 |
ggtaattttgattgaaataacaaggctctaacaacattcaaaatatgttgatgctttctttcaaccctcccat |
22643601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 402
Target Start/End: Original strand, 44289915 - 44290007
Alignment:
| Q |
310 |
agcatgagaaacagcatatgaccagaaattttttggtaaatttgattgaattaataatgctcttcctacattcaaaatatgttgatgttttct |
402 |
Q |
| |
|
|||||||| || ||||||||||||||| ||||||||||| || || |||| ||| | ||||| || ||||| | ||||||||| || ||||| |
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|
| T |
44289915 |
agcatgagtaaaagcatatgaccagaatttttttggtaatttggaatgaaataagatagctctcccaacattaagaatatgttggtgctttct |
44290007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 408
Target Start/End: Original strand, 6569597 - 6569637
Alignment:
| Q |
368 |
gctcttcctacattcaaaatatgttgatgttttctctctac |
408 |
Q |
| |
|
|||||||||||||| | ||||| |||||||||||||||||| |
|
|
| T |
6569597 |
gctcttcctacattgagaatatattgatgttttctctctac |
6569637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 408
Target Start/End: Original strand, 20699241 - 20699281
Alignment:
| Q |
368 |
gctcttcctacattcaaaatatgttgatgttttctctctac |
408 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
20699241 |
gctcttccaacattcaaaatatgttggtgttttctttctac |
20699281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 359
Target Start/End: Original strand, 25422108 - 25422216
Alignment:
| Q |
251 |
aaaaaatatggagaataattttgaagtacaggactagatactctatttataatgaacacagcatgagaaacagcatatgaccagaaattttttggtaaat |
350 |
Q |
| |
|
|||||||||||||| | |||||| | |||||| ||| |||||||| || ||||| || |||||| |||| |||| ||||| ||| |||| ||||||| |
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|
| T |
25422108 |
aaaaaatatggagattgattttgtaaaacaggagtaggcactctattcatgatgaatactgcatgaacaacatcataagaccaaaaacttttaggtaaat |
25422207 |
T |
|
| Q |
351 |
ttgattgaa |
359 |
Q |
| |
|
|||||||| |
|
|
| T |
25422208 |
gtgattgaa |
25422216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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