View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17434_high_20 (Length: 405)
Name: NF17434_high_20
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_high_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 22 - 396
Target Start/End: Original strand, 24129595 - 24129980
Alignment:
| Q |
22 |
gcaggcaatacggagtaccaattgaaatgcttgttagcattggtaaggccgaaacttctggccnnnnnnngttcaatcatatgtatattgtatttcgttt |
121 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24129595 |
gcaggcattatggagtaccaattgaaatgcttgttagcattggtaaggccgaaacttctggcctttttttgttcaatcatatgtatattgtatttcgttt |
24129694 |
T |
|
| Q |
122 |
agcatatttacatgcaacaatgcatgcatgttagatgtactactc-----------agtaccgggagagnnnnnnnnnnnnnggtggaaactgcttgact |
210 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| || ||||||||||||| |||||||||||||||||| |
|
|
| T |
24129695 |
agcatatttacatgcaacaatgtgtgcatgttagatgtactagtcgatcaatacatagtaccgggagagtttttctttttttggtggaaactgcttgact |
24129794 |
T |
|
| Q |
211 |
cttttgaaaatgtttcaaggagtgaagctttgtaactgctatagttggaataggttaaggactaaagatctgtaactgctatagtggattaggttaatct |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24129795 |
cttttgaaaatgtttcaaggagtgaagctttgtaactgctatagttggaataggttaaggactaaagatctgtaactgctatagtggattaggttaatct |
24129894 |
T |
|
| Q |
311 |
ggtagccacatattagtcaattttaagtgtaagccgaatttgacagcaataatggtaatactatcagtcttgattttgatctctgc |
396 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24129895 |
ggttgccacatattagtcaattttaagtgtaagccgaatttgacagcaataatggtaatactatcagtcttgattttgatctctgc |
24129980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 193 - 364
Target Start/End: Original strand, 24147793 - 24147961
Alignment:
| Q |
193 |
ggtggaaactgcttgactcttttgaaaatgtttcaaggagtgaagctttgtaactgctatagttggaataggttaaggactaaagatctgtaactgctat |
292 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||| ||| | ||||||| ||| |
|
|
| T |
24147793 |
ggtggaaactgcttcactcttttgaaaatgtttcagggaatgaagctttgtaactgctatag-tggaataggttaaggactgaagctatgtaacttctac |
24147891 |
T |
|
| Q |
293 |
agtggattaggttaatctggtagccacatattagtcaattttaagtgtaagccgaatttgacagcaataatg |
364 |
Q |
| |
|
|||||| ||||||||||| | |||||||||||||||||||| |||| |||||||||||| |||||||| |
|
|
| T |
24147892 |
agtggactaggttaatcttcttagcacatattagtcaattttaa--gtaaaccgaatttgacaacaataatg |
24147961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 24147628 - 24147748
Alignment:
| Q |
36 |
gtaccaattgaaatgcttgttagcattggtaaggccgaaacttctggccnnnnnnngttcaatcatatgtatattgtatttcgtttagcatatttacatg |
135 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||| |||| || ||| |||||||||||||||||||||||||| |||||||| |||| ||| |
|
|
| T |
24147628 |
gtaccaattgacatgcttgttagcattggtgaggctgaaaactcaggcgtttttttgttcaatcatatgtatattgtatttcatttagcatgtttaaatg |
24147727 |
T |
|
| Q |
136 |
caacaatgcatgcatgttaga |
156 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
24147728 |
caacaatgcatgcatgctaga |
24147748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University