View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17434_high_3 (Length: 634)

Name: NF17434_high_3
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17434_high_3
NF17434_high_3
[»] chr2 (18 HSPs)
chr2 (18-627)||(6718432-6719041)
chr2 (128-182)||(26202035-26202090)
chr2 (128-181)||(40682403-40682456)
chr2 (128-160)||(43511115-43511147)
chr2 (128-182)||(35379024-35379079)
chr2 (128-169)||(7928307-7928349)
chr2 (131-180)||(16398123-16398173)
chr2 (130-183)||(33319822-33319876)
chr2 (123-152)||(2091037-2091066)
chr2 (128-180)||(7035575-7035628)
chr2 (122-155)||(21828283-21828316)
chr2 (128-184)||(26626878-26626935)
chr2 (128-175)||(750684-750732)
chr2 (128-160)||(1493521-1493553)
chr2 (128-183)||(3611232-3611288)
chr2 (128-191)||(9174813-9174877)
chr2 (130-158)||(9395162-9395190)
chr2 (138-193)||(26143658-26143714)
[»] chr1 (22 HSPs)
chr1 (128-190)||(27820345-27820408)
chr1 (128-184)||(45975695-45975752)
chr1 (128-190)||(2777891-2777954)
chr1 (128-190)||(7137006-7137069)
chr1 (128-190)||(34290235-34290298)
chr1 (129-189)||(35179139-35179200)
chr1 (129-176)||(28689461-28689509)
chr1 (128-182)||(38503473-38503528)
chr1 (128-182)||(42174862-42174917)
chr1 (128-182)||(51695503-51695558)
chr1 (128-189)||(5887002-5887064)
chr1 (128-158)||(6292525-6292555)
chr1 (128-158)||(31517748-31517778)
chr1 (128-158)||(37593692-37593722)
chr1 (130-183)||(41195203-41195257)
chr1 (130-182)||(12564509-12564562)
chr1 (129-189)||(27140478-27140539)
chr1 (132-184)||(37631571-37631624)
chr1 (135-190)||(7472310-7472366)
chr1 (128-156)||(11941296-11941324)
chr1 (123-190)||(14629969-14630037)
chr1 (128-195)||(17577776-17577844)
[»] chr5 (17 HSPs)
chr5 (128-184)||(4014432-4014489)
chr5 (128-190)||(7984968-7985031)
chr5 (128-189)||(34160731-34160793)
chr5 (128-184)||(9202756-9202813)
chr5 (128-183)||(39105470-39105526)
chr5 (129-183)||(7319017-7319072)
chr5 (128-158)||(17258891-17258921)
chr5 (128-193)||(28413292-28413358)
chr5 (131-184)||(39594812-39594866)
chr5 (128-189)||(42582912-42582974)
chr5 (130-190)||(12425570-12425631)
chr5 (128-176)||(31071252-31071301)
chr5 (122-155)||(32372926-32372959)
chr5 (128-179)||(1465028-1465080)
chr5 (130-158)||(12467165-12467193)
chr5 (131-182)||(36318781-36318833)
chr5 (139-182)||(43300885-43300929)
[»] chr8 (15 HSPs)
chr8 (130-182)||(43504758-43504811)
chr8 (128-183)||(20672756-20672812)
chr8 (128-190)||(27028830-27028893)
chr8 (135-189)||(36338277-36338332)
chr8 (133-193)||(14247237-14247298)
chr8 (138-189)||(5069697-5069749)
chr8 (128-189)||(1930035-1930097)
chr8 (128-189)||(30251462-30251524)
chr8 (128-189)||(43717945-43718007)
chr8 (136-176)||(3536961-3537002)
chr8 (129-158)||(31862525-31862554)
chr8 (137-176)||(3537046-3537086)
chr8 (128-160)||(10120786-10120818)
chr8 (128-160)||(30389129-30389161)
chr8 (128-195)||(33714244-33714312)
[»] chr3 (24 HSPs)
chr3 (132-182)||(21367674-21367725)
chr3 (138-186)||(3845580-3845629)
chr3 (128-192)||(33883758-33883823)
chr3 (130-190)||(44747418-44747479)
chr3 (129-183)||(2719474-2719529)
chr3 (128-182)||(24085346-24085401)
chr3 (128-190)||(28622007-28622070)
chr3 (132-190)||(30443892-30443951)
chr3 (128-190)||(30573922-30573985)
chr3 (128-182)||(39980736-39980791)
chr3 (128-182)||(40665436-40665491)
chr3 (128-189)||(402550-402612)
chr3 (129-182)||(901931-901985)
chr3 (128-189)||(20669172-20669234)
chr3 (128-169)||(46031010-46031052)
chr3 (133-190)||(50600191-50600249)
chr3 (129-181)||(25185993-25186046)
chr3 (128-180)||(45541580-45541633)
chr3 (128-156)||(2128266-2128294)
chr3 (129-180)||(16790387-16790439)
chr3 (128-183)||(20880482-20880538)
chr3 (128-183)||(35394506-35394562)
chr3 (128-160)||(36887534-36887566)
chr3 (128-183)||(40608389-40608445)
[»] chr6 (10 HSPs)
chr6 (129-182)||(27894053-27894107)
chr6 (136-190)||(835265-835320)
chr6 (128-190)||(2735068-2735131)
chr6 (128-190)||(31624089-31624152)
chr6 (128-182)||(34430469-34430524)
chr6 (128-156)||(821833-821861)
chr6 (130-190)||(3155175-3155235)
chr6 (128-160)||(9912199-9912231)
chr6 (132-160)||(31624953-31624981)
chr6 (128-175)||(31813175-31813223)
[»] chr7 (9 HSPs)
chr7 (128-195)||(47559609-47559677)
chr7 (128-178)||(30181223-30181274)
chr7 (128-190)||(40688994-40689057)
chr7 (132-190)||(46280284-46280343)
chr7 (128-184)||(529380-529437)
chr7 (128-192)||(5947181-5947246)
chr7 (128-157)||(6552300-6552329)
chr7 (128-183)||(7244686-7244742)
chr7 (131-190)||(20526445-20526505)
[»] chr4 (10 HSPs)
chr4 (128-182)||(17822873-17822928)
chr4 (128-182)||(55414428-55414483)
chr4 (135-184)||(50004159-50004209)
chr4 (128-184)||(52746848-52746905)
chr4 (131-191)||(55302247-55302308)
chr4 (135-190)||(679254-679307)
chr4 (128-160)||(13126584-13126616)
chr4 (128-160)||(25332805-25332837)
chr4 (130-189)||(47800623-47800683)
chr4 (130-189)||(52259631-52259691)
[»] scaffold0221 (1 HSPs)
scaffold0221 (131-191)||(22229-22290)


Alignment Details
Target: chr2 (Bit Score: 598; Significance: 0; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 18 - 627
Target Start/End: Original strand, 6718432 - 6719041
Alignment:
Q  18 ggtatgaattttagattactggactaattatatgagctaacatccactttcacaactaatatttgcatgggcttgattcgattgacttatctgatgttaa 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6718432 ggtatgaattttagattactggactaattttatgagctaacatccactttcacaactaatatttgcatgggcttgattcgattgacttatctgatgttaa 6718531  T
Q  118 caacttatggtcataagctgttttcagcttattttcataagtttccaagatatcttataaaaacagcatatagtttgttatagtatacataagcaattat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6718532 caacttatggtcataagctgttttcagcttattttcataagtttccaagatatcttataaaaacagcatatagtttgttatagtatacataagcaattat 6718631  T
Q  218 atgataaccacttatgctacgacaagttctgaatatagtatacatatagtttgtgatagttaagctttttaaccaaacaagttttgaatatggttgacaa 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6718632 atgataaccacttatgctacgacaagttctgaatatagtatacatatagtttgttatagttaagctttttaaccaaacaagttttgaatatggttgacaa 6718731  T
Q  318 tttgtcatattgcattgcagggcatttcaatgggtttaggaccagacggcaagcttcgatatccatctcatcacgagctaccgagtaatggtaaaactca 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6718732 tttgtcatattgcattgcagggcatttcaatgggtttaggaccagacggcaagcttcgatatccatctcatcacgagctaccgagtaatggtaaaactca 6718831  T
Q  418 aggagttggggaattccaatgttatgatcaaaacatgctaagtttactcaaacaacaagctgaatcatctggaaatcctttatgggggcttggcggtccc 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6718832 aggagttggggaattccaatgttatgatcaaaacatgctaagtttactcaaacaacaagctgaatcatctggaaatcctttatgggggcttggcggtccc 6718931  T
Q  518 catgatgtgcctacctatgaccaatcaccatactccaacagcttcttcaaggatggtggttcttgggagtcttcatatggggacttcttcctttcatggt 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6718932 catgatgtgcctacctatgaccaatcaccatactccaacagcttcttcaaggatggtggttcttgggagtcttcatatggggacttcttcctttcatggt 6719031  T
Q  618 attcatctca 627  Q
    |||| |||||    
T  6719032 attcttctca 6719041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 26202090 - 26202035
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 182  Q
    ||||||||| |||||| |||||||||||||||| ||||| ||||||||||||||||    
T  26202090 tcataagcttttttcaacttattttcataagttctccaatatatcttataaaaaca 26202035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 40682403 - 40682456
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtttccaagatatcttataaaaac 181  Q
    ||||||| |||||||| ||||||||||||||||  ||||||||||||| |||||    
T  40682403 tcataagttgttttcaacttattttcataagttctcaagatatcttatgaaaac 40682456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 43511147 - 43511115
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt 160  Q
    |||||||||||||||||||||||||||||||||    
T  43511147 tcataagctgttttcagcttattttcataagtt 43511115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 35379024 - 35379079
Alignment:
Q  128 tcataagctgttttcagcttattttcataag-tttccaagatatcttataaaaaca 182  Q
    ||||||| ||||||||||||||||||||||| | ||||||||| ||||| ||||||    
T  35379024 tcataagttgttttcagcttattttcataagctctccaagatagcttatgaaaaca 35379079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 7928307 - 7928349
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagata 169  Q
    ||||||| ||||||||||||||||||||||||| |||||||||    
T  7928307 tcataagttgttttcagcttattttcataagttctccaagata 7928349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 16398173 - 16398123
Alignment:
Q  131 taagctgttttcagcttattttcataagtt-tccaagatatcttataaaaa 180  Q
    |||||||||||||||||||||||||||||| ||||| ||| ||||| ||||    
T  16398173 taagctgttttcagcttattttcataagttctccaacataacttatgaaaa 16398123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 33319822 - 33319876
Alignment:
Q  130 ataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacag 183  Q
    ||||||| ||||||||||||||||||||||| |||||||||  |||| |||||||    
T  33319822 ataagcttttttcagcttattttcataagttctccaagatagtttatgaaaacag 33319876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 152
Target Start/End: Original strand, 2091037 - 2091066
Alignment:
Q  123 tatggtcataagctgttttcagcttatttt 152  Q
    ||||||||||||||||||||||||||||||    
T  2091037 tatggtcataagctgttttcagcttatttt 2091066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 7035575 - 7035628
Alignment:
Q  128 tcataagctgttttcagcttattttcataag-tttccaagatatcttataaaaa 180  Q
    ||||||| ||||||| ||||||||||||||| |||||||||||  |||||||||    
T  7035575 tcataaggtgttttccgcttattttcataagttttccaagatagtttataaaaa 7035628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 21828316 - 21828283
Alignment:
Q  122 ttatggtcataagctgttttcagcttattttcat 155  Q
    ||||| ||||||||||||||||||||||||||||    
T  21828316 ttatgttcataagctgttttcagcttattttcat 21828283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 26626935 - 26626878
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagc 184  Q
    |||||| |||||||||| ||||||||||||||| | ||||||| ||||| ||||||||    
T  26626935 tcataatctgttttcaggttattttcataagttctgcaagatagcttatgaaaacagc 26626878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 750732 - 750684
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttat 175  Q
    |||||||||||||| ||||||||| |||||||| ||||||||| |||||    
T  750732 tcataagctgttttgagcttatttgcataagttctccaagatagcttat 750684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 1493521 - 1493553
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt 160  Q
    ||||||| |||||||||||||||||||||||||    
T  1493521 tcataagttgttttcagcttattttcataagtt 1493553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 3611288 - 3611232
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacag 183  Q
    |||||| ||||||| |||||||||||||||||| ||||||||| ||| | |||||||    
T  3611288 tcataaactgtttttagcttattttcataagttctccaagatagcttgtgaaaacag 3611232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 9174877 - 9174813
Alignment:
Q  128 tcataagctgttttcagcttattttcataag-tttccaagatatcttataaaaacagcatatagt 191  Q
    ||||||||| ||||||||||||||||||||| | |  |||||| ||||| |||||||| ||||||    
T  9174877 tcataagctattttcagcttattttcataagctctgtaagatagcttatgaaaacagcttatagt 9174813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 158
Target Start/End: Complemental strand, 9395190 - 9395162
Alignment:
Q  130 ataagctgttttcagcttattttcataag 158  Q
    |||||||||||||||||||||||||||||    
T  9395190 ataagctgttttcagcttattttcataag 9395162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 26143658 - 26143714
Alignment:
Q  138 ttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatagttt 193  Q
    ||||||||||||||||||||||| |||||| || ||||| |||||||| || |||||    
T  26143658 ttttcagcttattttcataagttctccaagttagcttatgaaaacagcttacagttt 26143714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 27820345 - 27820408
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 190  Q
    ||||||||| |||||||||||||||||||| || ||||||||| ||||||||||||||||||||    
T  27820345 tcataagctattttcagcttattttcataaattctccaagatagcttataaaaacagcatatag 27820408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 45975752 - 45975695
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagc 184  Q
    |||||||||||||||||||||||||||||| || ||||||||| ||||| ||||||||    
T  45975752 tcataagctgttttcagcttattttcataaattctccaagatagcttatgaaaacagc 45975695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 2777954 - 2777891
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 190  Q
    |||||||| |||||||||||||||||||||||| |||||| || ||||| |||||||| |||||    
T  2777954 tcataagccgttttcagcttattttcataagttctccaagttaacttattaaaacagcttatag 2777891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 7137006 - 7137069
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 190  Q
    ||||||| | ||||||||||||||||||||||| ||||||||| ||||| |||||||| |||||    
T  7137006 tcataagttattttcagcttattttcataagttctccaagatagcttatgaaaacagcttatag 7137069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 34290298 - 34290235
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 190  Q
    ||||||| ||||||||||||||||||||||||| | ||||||| ||||| |||||||| |||||    
T  34290298 tcataagttgttttcagcttattttcataagttcttcaagatagcttatgaaaacagcttatag 34290235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 35179200 - 35179139
Alignment:
Q  129 cataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatata 189  Q
    |||||||||||||||||||||||||||||||| ||||  ||| ||||| |||||||| ||||    
T  35179200 cataagctgttttcagcttattttcataagttctccataataacttatgaaaacagcttata 35179139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 28689461 - 28689509
Alignment:
Q  129 cataagctgttttcagcttattttcataag-tttccaagatatcttata 176  Q
    |||||| ||||||||||||||||||||||| ||||||||||| ||||||    
T  28689461 cataagttgttttcagcttattttcataagctttccaagatagcttata 28689509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 38503473 - 38503528
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 182  Q
    ||||||| ||||||||||||||||||||||||| ||||||||| || | |||||||    
T  38503473 tcataagttgttttcagcttattttcataagttctccaagatagctaacaaaaaca 38503528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 42174917 - 42174862
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 182  Q
    |||||||||||||| | |||||||||||||||| ||||| ||| ||||||||||||    
T  42174917 tcataagctgtttttaacttattttcataagttctccaatataacttataaaaaca 42174862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 51695503 - 51695558
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 182  Q
    ||||||||| |||||||||||||||||||| || ||||||||| ||||| ||||||    
T  51695503 tcataagctattttcagcttattttcataaattctccaagatagcttatgaaaaca 51695558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 5887002 - 5887064
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatata 189  Q
    ||||||| |||||||||||||||||| |||||| ||||||||  |||||| ||||||| ||||    
T  5887002 tcataagttgttttcagcttattttcgtaagttctccaagatggcttatagaaacagcttata 5887064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 158
Target Start/End: Complemental strand, 6292555 - 6292525
Alignment:
Q  128 tcataagctgttttcagcttattttcataag 158  Q
    |||||||||||||||||||||||||||||||    
T  6292555 tcataagctgttttcagcttattttcataag 6292525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 158
Target Start/End: Original strand, 31517748 - 31517778
Alignment:
Q  128 tcataagctgttttcagcttattttcataag 158  Q
    |||||||||||||||||||||||||||||||    
T  31517748 tcataagctgttttcagcttattttcataag 31517778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 158
Target Start/End: Original strand, 37593692 - 37593722
Alignment:
Q  128 tcataagctgttttcagcttattttcataag 158  Q
    |||||||||||||||||||||||||||||||    
T  37593692 tcataagctgttttcagcttattttcataag 37593722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 41195203 - 41195257
Alignment:
Q  130 ataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacag 183  Q
    ||||||| ||||||||||||||||||||||| |||||||||  |||| |||||||    
T  41195203 ataagcttttttcagcttattttcataagttctccaagatagtttatgaaaacag 41195257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 12564509 - 12564562
Alignment:
Q  130 ataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 182  Q
    ||||| |||||||||||||||| |||||||| ||||||||| ||||| ||||||    
T  12564509 ataagttgttttcagcttatttccataagttctccaagatagcttatgaaaaca 12564562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 27140539 - 27140478
Alignment:
Q  129 cataagctgttttcagcttattttcataag-tttccaagatatcttataaaaacagcatata 189  Q
    |||||| |||||||||||||||| |||||| | |||| |||| |||||||||||||| ||||    
T  27140539 cataagttgttttcagcttatttgcataagctctccatgatagcttataaaaacagcttata 27140478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 37631571 - 37631624
Alignment:
Q  132 aagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagc 184  Q
    ||||| ||||||||||||||||||||||| ||||| ||| |||| |||||||||    
T  37631571 aagcttttttcagcttattttcataagttctccaatatagcttacaaaaacagc 37631624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 7472366 - 7472310
Alignment:
Q  135 ctgttttcagcttattttcataag-tttccaagatatcttataaaaacagcatatag 190  Q
    |||||||||||||||||||||||| | ||||||||| |||||  ||||||| |||||    
T  7472366 ctgttttcagcttattttcataagctctccaagatagcttatggaaacagcttatag 7472310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 156
Target Start/End: Complemental strand, 11941324 - 11941296
Alignment:
Q  128 tcataagctgttttcagcttattttcata 156  Q
    |||||||||||||||||||||||||||||    
T  11941324 tcataagctgttttcagcttattttcata 11941296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 14629969 - 14630037
Alignment:
Q  123 tatggtcataagctgttttcagcttattttcat-aagtttccaagatatcttataaaaacagcatatag 190  Q
    |||| ||||||| |||||||||||||||| ||| |||| ||||||||| ||||| |||| ||| |||||    
T  14629969 tatgttcataagttgttttcagcttatttccataaagtctccaagatagcttatgaaaatagcttatag 14630037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 17577776 - 17577844
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatagtttgt 195  Q
    |||||||||||||| ||||||||||  |||||| | ||||||| |||| ||||||||| ||||| ||||    
T  17577776 tcataagctgttttaagcttatttttgtaagttcttcaagataacttacaaaaacagcttatagcttgt 17577844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 4014432 - 4014489
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagc 184  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||    
T  4014432 tcataagctgttttcagcttattttcataagttctccaagatagcttatgaaaacagc 4014489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 7985031 - 7984968
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 190  Q
    |||||||||||||||||||||||||||||| || ||||||||| ||||| |||| ||| |||||    
T  7985031 tcataagctgttttcagcttattttcataaattctccaagatagcttatgaaaaaagcttatag 7984968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 34160793 - 34160731
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatata 189  Q
    |||||| |||||||||||||||||||||||||| |||||||||||| || |||| ||| ||||    
T  34160793 tcataaactgttttcagcttattttcataagttctccaagatatctaatgaaaatagcttata 34160731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 9202756 - 9202813
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagc 184  Q
    ||||||||||||| ||||||||||||||||||| | ||||||| ||||| ||||||||    
T  9202756 tcataagctgtttccagcttattttcataagttcttcaagataacttatgaaaacagc 9202813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 39105526 - 39105470
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacag 183  Q
    ||||||||| |||| |||||||||||||||||| ||||||||| ||||| |||||||    
T  39105526 tcataagctatttttagcttattttcataagttctccaagatagcttatgaaaacag 39105470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 7319017 - 7319072
Alignment:
Q  129 cataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacag 183  Q
    |||||| |||| |||||||||||||||||||| ||||||||| ||||| |||||||    
T  7319017 cataagttgttctcagcttattttcataagttctccaagatagcttatgaaaacag 7319072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 158
Target Start/End: Original strand, 17258891 - 17258921
Alignment:
Q  128 tcataagctgttttcagcttattttcataag 158  Q
    |||||||||||||||||||||||||||||||    
T  17258891 tcataagctgttttcagcttattttcataag 17258921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 28413292 - 28413358
Alignment:
Q  128 tcataagctgttttcagcttattttcat-aagtttccaagatatcttataaaaacagcatatagttt 193  Q
    |||||||||||||||||||||||| ||| || | ||||||||| ||||| || ||||| ||||||||    
T  28413292 tcataagctgttttcagcttatttccataaactctccaagataacttatgaacacagcgtatagttt 28413358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 39594866 - 39594812
Alignment:
Q  131 taagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagc 184  Q
    |||| |||||||||||||||||||||||||   ||||||||||||| ||||||||    
T  39594866 taagttgttttcagcttattttcataagttcaacaagatatcttatgaaaacagc 39594812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 42582974 - 42582912
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatata 189  Q
    |||||| ||||||| |||||||||||||||||| ||||| ||| |||| ||||||||| ||||    
T  42582974 tcataaactgttttgagcttattttcataagttctccaatatagcttacaaaaacagcttata 42582912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 12425631 - 12425570
Alignment:
Q  130 ataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 190  Q
    ||||| |||||||| |||||||||||||||| ||||||||| ||| | |||||||| |||||    
T  12425631 ataagttgttttcaacttattttcataagttctccaagatagcttgtgaaaacagcttatag 12425570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 31071301 - 31071252
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttata 176  Q
    |||||||||||||||||||||||| ||||| || |||||||||| |||||    
T  31071301 tcataagctgttttcagcttatttgcataaattctccaagatatgttata 31071252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 32372959 - 32372926
Alignment:
Q  122 ttatggtcataagctgttttcagcttattttcat 155  Q
    ||||| ||||||||||||||||||||||||||||    
T  32372959 ttatgttcataagctgttttcagcttattttcat 32372926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 1465028 - 1465080
Alignment:
Q  128 tcataagctgttttcagcttattttcataagt-ttccaagatatcttataaaa 179  Q
    ||||||| ||||||||||||||||||| ||||  ||||||||| |||||||||    
T  1465028 tcataagttgttttcagcttattttcacaagtcctccaagatagcttataaaa 1465080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 158
Target Start/End: Complemental strand, 12467193 - 12467165
Alignment:
Q  130 ataagctgttttcagcttattttcataag 158  Q
    |||||||||||||||||||||||||||||    
T  12467193 ataagctgttttcagcttattttcataag 12467165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 36318833 - 36318781
Alignment:
Q  131 taagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 182  Q
    ||||||||||||||||||||| ||||| || ||||||||| ||||| ||||||    
T  36318833 taagctgttttcagcttatttacataaattctccaagatagcttatgaaaaca 36318781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 43300929 - 43300885
Alignment:
Q  139 tttcagcttattttcataagtt-tccaagatatcttataaaaaca 182  Q
    |||||||||||||||||||||| ||||||||| |||| |||||||    
T  43300929 tttcagcttattttcataagttctccaagatagcttacaaaaaca 43300885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 43504811 - 43504758
Alignment:
Q  130 ataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 182  Q
    |||||||||||||||||||||| |||||||| ||||||||| ||||||||||||    
T  43504811 ataagctgttttcagcttatttccataagttctccaagatagcttataaaaaca 43504758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 20672812 - 20672756
Alignment:
Q  128 tcataagctgttttcagcttattttcataag-tttccaagatatcttataaaaacag 183  Q
    ||||||||||||||||||||||||||||||| | |||| |||| |||||||||||||    
T  20672812 tcataagctgttttcagcttattttcataagctctccaggatagcttataaaaacag 20672756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 27028893 - 27028830
Alignment:
Q  128 tcataagctgttttcagcttattttcataag-tttccaagatatcttataaaaacagcatatag 190  Q
    ||||||||| ||||||||||||||||||||| | ||||||||| ||||| |||||||| |||||    
T  27028893 tcataagctattttcagcttattttcataagctctccaagatagcttatgaaaacagcttatag 27028830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 36338277 - 36338332
Alignment:
Q  135 ctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatata 189  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||||||| ||||    
T  36338277 ctgttttcagcttattttcataagttctcaaagatattttataaaaacagcttata 36338332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 14247237 - 14247298
Alignment:
Q  133 agctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatagttt 193  Q
    |||||||||||||||||||||||||||| || | |||||||||  |||||||| ||||||||    
T  14247237 agctgttttcagcttattttcataagttctctacgatatcttacgaaaacagcttatagttt 14247298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 5069749 - 5069697
Alignment:
Q  138 ttttcagcttattttcataag-tttccaagatatcttataaaaacagcatata 189  Q
    ||||||||||||||||||||| |||| |||||||||||| |||||||| ||||    
T  5069749 ttttcagcttattttcataagctttcgaagatatcttatgaaaacagcttata 5069697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 1930097 - 1930035
Alignment:
Q  128 tcataagctgttttcagcttattttcataa-gtttccaagatatcttataaaaacagcatata 189  Q
    ||||||||||||||||||||||||||| || ||  |||||||| ||||| |||||||| ||||    
T  1930097 tcataagctgttttcagcttattttcacaaggtcaccaagatagcttatgaaaacagcttata 1930035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 30251462 - 30251524
Alignment:
Q  128 tcataagctgttttcagcttattttcataagt-ttccaagatatcttataaaaacagcatata 189  Q
    ||||||||| ||| ||||||||||||||||||  ||||||||| ||||| |||||||| ||||    
T  30251462 tcataagctttttacagcttattttcataagtggtccaagatagcttatgaaaacagcttata 30251524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 43717945 - 43718007
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatata 189  Q
    |||||||||||||| |||||| ||||||||||| ||||||||| |||||  ||||||| ||||    
T  43717945 tcataagctgtttttagcttactttcataagttctccaagatagcttatgcaaacagcttata 43718007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 3536961 - 3537002
Alignment:
Q  136 tgttttcagcttattttcataagtt-tccaagatatcttata 176  Q
    |||||||||||||||| |||||||| ||||||||||||||||    
T  3536961 tgttttcagcttatttccataagttctccaagatatcttata 3537002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 158
Target Start/End: Complemental strand, 31862554 - 31862525
Alignment:
Q  129 cataagctgttttcagcttattttcataag 158  Q
    ||||||||||||||||||||||||||||||    
T  31862554 cataagctgttttcagcttattttcataag 31862525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 137 - 176
Target Start/End: Original strand, 3537046 - 3537086
Alignment:
Q  137 gttttcagcttattttcataagtt-tccaagatatcttata 176  Q
    ||||||||||||||| |||||||| ||||||||||||||||    
T  3537046 gttttcagcttatttccataagttctccaagatatcttata 3537086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 10120818 - 10120786
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt 160  Q
    ||||| |||||||||||||||||||||||||||    
T  10120818 tcatatgctgttttcagcttattttcataagtt 10120786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 30389161 - 30389129
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt 160  Q
    ||||||| |||||||||||||||||||||||||    
T  30389161 tcataagttgttttcagcttattttcataagtt 30389129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 33714244 - 33714312
Alignment:
Q  128 tcataagctgttttcagcttattttcataag-tttccaagatatcttataaaaacagcatatagtttgt 195  Q
    ||||||||||||||||||||||||| ||||| | ||| ||||| ||||| |||| ||| ||||| ||||    
T  33714244 tcataagctgttttcagcttatttttataagctctcccagatagcttatgaaaatagcttatagattgt 33714312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 21367725 - 21367674
Alignment:
Q  132 aagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 182  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||| ||||||    
T  21367725 aagctgttttcagcttattttcataagttctccaagatagcttatgaaaaca 21367674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 3845580 - 3845629
Alignment:
Q  138 ttttcagcttattttcataagtt-tccaagatatcttataaaaacagcat 186  Q
    ||||||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  3845580 ttttcagcttattttcataagttctccaagataacttatgaaaacagcat 3845629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 33883758 - 33883823
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatagtt 192  Q
    ||||||| ||||||||||||||||||||||||| || |||||| |||||  ||||| |||||||||    
T  33883758 tcataagttgttttcagcttattttcataagttctctaagatagcttatgtaaacaacatatagtt 33883823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 44747418 - 44747479
Alignment:
Q  130 ataagctgttttcagcttattttcataag-tttccaagatatcttataaaaacagcatatag 190  Q
    |||||||  |||||||||||||||||||| ||||||||||| ||||| |||||||| |||||    
T  44747418 ataagcttctttcagcttattttcataagttttccaagatagcttatgaaaacagcttatag 44747479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 2719529 - 2719474
Alignment:
Q  129 cataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacag 183  Q
    |||||| |||| |||||||||||||||||||| ||||||||| ||||| |||||||    
T  2719529 cataagttgttctcagcttattttcataagttctccaagatagcttatgaaaacag 2719474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 24085346 - 24085401
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 182  Q
    ||||| ||||||||||||||||||||| ||||| ||||||||| |||| |||||||    
T  24085346 tcatacgctgttttcagcttattttcacaagttctccaagatagcttacaaaaaca 24085401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 28622007 - 28622070
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 190  Q
    ||||||||||||||||| ||||||||||||||| || ||||||  |||| |||||||| |||||    
T  28622007 tcataagctgttttcaggttattttcataagttctcgaagatagtttatgaaaacagcttatag 28622070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 30443951 - 30443892
Alignment:
Q  132 aagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 190  Q
    ||||| ||||||||||||||||||||||| ||||| |||  ||||||||||||| |||||    
T  30443951 aagcttttttcagcttattttcataagttctccaatatagtttataaaaacagcttatag 30443892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 30573922 - 30573985
Alignment:
Q  128 tcataagctgttttcagcttattttcataag-tttccaagatatcttataaaaacagcatatag 190  Q
    |||||||||||||||||||||| ||||| || | ||||||||| ||||| |||||| |||||||    
T  30573922 tcataagctgttttcagcttatgttcatcagctctccaagatagcttatgaaaacatcatatag 30573985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 39980791 - 39980736
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 182  Q
    ||||||||| |||||| |||||||||||||||| ||||| ||| ||||||||||||    
T  39980791 tcataagcttttttcaacttattttcataagttctccaatatagcttataaaaaca 39980736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 40665491 - 40665436
Alignment:
Q  128 tcataagctgttttcagcttattttcataag-tttccaagatatcttataaaaaca 182  Q
    ||||||||||||||||||||||||| ||||| | ||||||||| ||||| ||||||    
T  40665491 tcataagctgttttcagcttatttttataagctctccaagataacttatgaaaaca 40665436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 402550 - 402612
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatata 189  Q
    ||||||||||||||||||||| ||||| ||||| | |||||||  ||||||||||||| ||||    
T  402550 tcataagctgttttcagcttaatttcacaagttcttcaagatagattataaaaacagcttata 402612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 901985 - 901931
Alignment:
Q  129 cataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 182  Q
    |||||||| |||||| |||||||||||||||| ||||| ||| ||||||||||||    
T  901985 cataagcttttttcaacttattttcataagttctccaatatagcttataaaaaca 901931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 20669234 - 20669172
Alignment:
Q  128 tcataagctgttttcagcttattttcataag-tttccaagatatcttataaaaacagcatata 189  Q
    ||||||||||||||| |||||||| |||||| | ||||||||| ||||| |||||||| ||||    
T  20669234 tcataagctgttttccgcttatttacataagctctccaagatagcttatgaaaacagcttata 20669172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 46031052 - 46031010
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagata 169  Q
    ||||||||||||||||||||||||| ||||||| |||||||||    
T  46031052 tcataagctgttttcagcttattttaataagttctccaagata 46031010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 50600191 - 50600249
Alignment:
Q  133 agctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 190  Q
    |||||||||||||||||||||||||||| ||||| ||| || || |||||||| |||||    
T  50600191 agctgttttcagcttattttcataagttctccaatatagctgatgaaaacagcttatag 50600249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 25186046 - 25185993
Alignment:
Q  129 cataagctgttttcagcttattttcataag-tttccaagatatcttataaaaac 181  Q
    |||||| |||||||| |||||||||| ||| ||||||||||| |||||||||||    
T  25186046 cataagttgttttcatcttattttcacaagatttccaagatagcttataaaaac 25185993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 45541633 - 45541580
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaa 180  Q
    ||||||||||||||||| ||||| ||||||||| ||||||||| ||||| ||||    
T  45541633 tcataagctgttttcaggttattctcataagttatccaagatagcttatgaaaa 45541580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 156
Target Start/End: Original strand, 2128266 - 2128294
Alignment:
Q  128 tcataagctgttttcagcttattttcata 156  Q
    |||||||||||||||||||||||||||||    
T  2128266 tcataagctgttttcagcttattttcata 2128294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 16790387 - 16790439
Alignment:
Q  129 cataagctgttttcagcttattttcataag-tttccaagatatcttataaaaa 180  Q
    |||||||||||||||| ||||||||||||| | ||||||||| ||||| ||||    
T  16790387 cataagctgttttcagtttattttcataagctatccaagatagcttatgaaaa 16790439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 20880538 - 20880482
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacag 183  Q
    ||||||||| |||| |||||||||||||||||| ||||| ||| ||| |||||||||    
T  20880538 tcataagcttttttgagcttattttcataagttctccaatatagcttttaaaaacag 20880482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 35394506 - 35394562
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacag 183  Q
    |||||||||||||||| ||||||||||||| || | ||||||| ||||| |||||||    
T  35394506 tcataagctgttttcaacttattttcataaattcttcaagatagcttatgaaaacag 35394562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 36887566 - 36887534
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt 160  Q
    ||||||| |||||||||||||||||||||||||    
T  36887566 tcataagatgttttcagcttattttcataagtt 36887534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 40608389 - 40608445
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacag 183  Q
    ||||||||||||||||||||| || |||||||| |||| ||||  ||||||||||||    
T  40608389 tcataagctgttttcagcttacttccataagttctccaggatagtttataaaaacag 40608445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 27894107 - 27894053
Alignment:
Q  129 cataagctgttttcagcttattttcataag-tttccaagatatcttataaaaaca 182  Q
    ||||| |||||||||||||||||||||||| ||| ||||||||||||| ||||||    
T  27894107 cataaactgttttcagcttattttcataagcttttcaagatatcttatgaaaaca 27894053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 835265 - 835320
Alignment:
Q  136 tgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 190  Q
    ||||||||||||||||||||||||| ||||||||| ||||| ||||| || |||||    
T  835265 tgttttcagcttattttcataagttctccaagatagcttatgaaaactgcttatag 835320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 2735131 - 2735068
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 190  Q
    ||||||||||||||| ||||||||||||||||| | ||||||  ||||| |||||||| |||||    
T  2735131 tcataagctgttttcggcttattttcataagttgttcaagattgcttatgaaaacagcttatag 2735068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 31624152 - 31624089
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 190  Q
    |||||||||||||||| ||||||||||||| || ||||||||| | ||| |||||||| |||||    
T  31624152 tcataagctgttttcaacttattttcataatttctccaagatagcctatgaaaacagcttatag 31624089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 34430469 - 34430524
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 182  Q
    ||||||||| |||||||||||||||||||| || ||||||||| ||||| ||||||    
T  34430469 tcataagcttttttcagcttattttcataacttctccaagatagcttatgaaaaca 34430524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 156
Target Start/End: Complemental strand, 821861 - 821833
Alignment:
Q  128 tcataagctgttttcagcttattttcata 156  Q
    |||||||||||||||||||||||||||||    
T  821861 tcataagctgttttcagcttattttcata 821833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 3155235 - 3155175
Alignment:
Q  130 ataagctgttttcagcttattttcataagtttccaagatatcttataaaaacagcatatag 190  Q
    |||||||||||||||||||||| ||||  | |||| |||||||||| |||| ||| |||||    
T  3155235 ataagctgttttcagcttatttccatagctctccaggatatcttatgaaaatagcttatag 3155175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 9912199 - 9912231
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt 160  Q
    |||||||||||||| ||||||||||||||||||    
T  9912199 tcataagctgttttgagcttattttcataagtt 9912231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 132 - 160
Target Start/End: Original strand, 31624953 - 31624981
Alignment:
Q  132 aagctgttttcagcttattttcataagtt 160  Q
    |||||||||||||||||||||||||||||    
T  31624953 aagctgttttcagcttattttcataagtt 31624981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 31813223 - 31813175
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttat 175  Q
    |||||||| |||||||||||||||||||| ||| ||||||||| |||||    
T  31813223 tcataagccgttttcagcttattttcatatgttctccaagatagcttat 31813175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 47559609 - 47559677
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatagtttgt 195  Q
    ||||||| ||||||| ||| ||||||||||||| ||||| ||| ||||| |||||||| ||||||||||    
T  47559609 tcataagttgttttcggctcattttcataagttctccaaaataacttatgaaaacagcttatagtttgt 47559677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 30181274 - 30181223
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaa 178  Q
    ||||||||| || |||||||||||||| ||||| ||||||||||||||||||    
T  30181274 tcataagctattatcagcttattttcaaaagttctccaagatatcttataaa 30181223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 40688994 - 40689057
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 190  Q
    |||||||||||||| |||||||||||||||||| |||| |||| ||||| || ||||| |||||    
T  40688994 tcataagctgttttgagcttattttcataagttatccaggatagcttatgaacacagcttatag 40689057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 46280284 - 46280343
Alignment:
Q  132 aagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 190  Q
    ||||| |||||||| |||||||||||||| ||||| ||| |||||||||||||| |||||    
T  46280284 aagcttttttcagcctattttcataagttctccaatatagcttataaaaacagcttatag 46280343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 529437 - 529380
Alignment:
Q  128 tcataagctgttttcagcttattttcataag-tttccaagatatcttataaaaacagc 184  Q
    |||||||||||||||| | |||||||||||| | ||||||||| ||||| ||||||||    
T  529437 tcataagctgttttcaacatattttcataagctctccaagatagcttatgaaaacagc 529380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 5947246 - 5947181
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatagtt 192  Q
    ||||||||| |||||||||||||||||||| || ||| ||||| ||||| || ||||| |||||||    
T  5947246 tcataagctcttttcagcttattttcataacttctcctagatagcttatgaatacagcttatagtt 5947181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 157
Target Start/End: Original strand, 6552300 - 6552329
Alignment:
Q  128 tcataagctgttttcagcttattttcataa 157  Q
    ||||||||||||||||||||||||||||||    
T  6552300 tcataagctgttttcagcttattttcataa 6552329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 7244742 - 7244686
Alignment:
Q  128 tcataagctgttttcagcttattttcataag-tttccaagatatcttataaaaacag 183  Q
    ||||||| ||||||||||||||||||||||| | ||||| ||| ||||| |||||||    
T  7244742 tcataagttgttttcagcttattttcataagctctccaatatagcttatgaaaacag 7244686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 20526505 - 20526445
Alignment:
Q  131 taagctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagcatatag 190  Q
    ||||||||||| ||||||||||||| |||| ||||| ||| ||||| |||||||| |||||    
T  20526505 taagctgtttttagcttattttcattagttctccaaaatagcttatgaaaacagcttatag 20526445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 17822873 - 17822928
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 182  Q
    ||||||||| |||| |||||||||||||||||| ||||||||| ||||| ||||||    
T  17822873 tcataagctttttttagcttattttcataagttctccaagatagcttatgaaaaca 17822928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 55414428 - 55414483
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt-tccaagatatcttataaaaaca 182  Q
    ||||||||| |||||| |||||||||||||||| ||||||||| ||||| ||||||    
T  55414428 tcataagcttttttcaacttattttcataagttctccaagataacttatgaaaaca 55414483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 50004159 - 50004209
Alignment:
Q  135 ctgttttcagcttattttcataagtt-tccaagatatcttataaaaacagc 184  Q
    |||||||||||||||||||||||||| ||||||||| ||||  ||||||||    
T  50004159 ctgttttcagcttattttcataagttctccaagataacttaggaaaacagc 50004209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 52746848 - 52746905
Alignment:
Q  128 tcataagctgttttcagcttattttcataag-tttccaagatatcttataaaaacagc 184  Q
    ||||||||||||||||||| |||||||||||  || ||||||| ||||| ||||||||    
T  52746848 tcataagctgttttcagctgattttcataagccttacaagatagcttatgaaaacagc 52746905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 55302308 - 55302247
Alignment:
Q  131 taagctgttttcagcttattttcataag-tttccaagatatcttataaaaacagcatatagt 191  Q
    |||||| ||||||||||||||||||||| ||||||| ||| ||||| | |||||| ||||||    
T  55302308 taagcttttttcagcttattttcataagttttccaacatagcttatgataacagcttatagt 55302247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 679307 - 679254
Alignment:
Q  135 ctgttttcagcttattttcataagtttccaagatatcttataaaaacagcatatag 190  Q
    ||||||| ||||||||||||||||||  ||||||| ||||| |||||||| |||||    
T  679307 ctgttttgagcttattttcataagtt--caagataacttatgaaaacagcttatag 679254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 13126584 - 13126616
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt 160  Q
    ||||||||| |||||||||||||||||||||||    
T  13126584 tcataagcttttttcagcttattttcataagtt 13126616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 25332837 - 25332805
Alignment:
Q  128 tcataagctgttttcagcttattttcataagtt 160  Q
    ||||||| |||||||||||||||||||||||||    
T  25332837 tcataagttgttttcagcttattttcataagtt 25332805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 47800683 - 47800623
Alignment:
Q  130 ataagctgttttcagcttattttcataag-tttccaagatatcttataaaaacagcatata 189  Q
    |||||| |||||||||||||||||||||| | | ||||||| ||||| |||||||| ||||    
T  47800683 ataagcggttttcagcttattttcataagctcttcaagatagcttatgaaaacagcttata 47800623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 52259691 - 52259631
Alignment:
Q  130 ataagctgttttcagcttattttcataag-tttccaagatatcttataaaaacagcatata 189  Q
    ||||||| |||||| |||||||||||||| | ||| ||||| |||||||||||||| ||||    
T  52259691 ataagctattttcaacttattttcataagctctcccagatagcttataaaaacagcttata 52259631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 22290 - 22229
Alignment:
Q  131 taagctgttttcagcttattttcataag-tttccaagatatcttataaaaacagcatatagt 191  Q
    |||||| ||||||||||||||||||||| ||||||| ||| ||||| | |||||| ||||||    
T  22290 taagcttttttcagcttattttcataagttttccaacatagcttatgataacagcttatagt 22229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University