View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_high_30 (Length: 326)
Name: NF17434_high_30
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_high_30 |
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| [»] scaffold0169 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 64 - 309
Target Start/End: Complemental strand, 8343041 - 8342796
Alignment:
| Q |
64 |
ggtgaaaattagacaaatacttagatgacttttcgtgttctacacaaaagaacaggacacaatttcaagaacttttccttgtgtaccatgtcctgatatt |
163 |
Q |
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| T |
8343041 |
ggtgaaaattagacaaatacttagatgacttttcttgttctacacaaaagaacaagacacaatttcaagaacttttccttgtttaccatgtcctgatatt |
8342942 |
T |
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| Q |
164 |
aatatacaaaaatatggaaataaatagtagttgtcaaaatacaagagagttttgaacctgatgaaatgcaaaatacatattatacgttttgctcccatat |
263 |
Q |
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| T |
8342941 |
aatatacaaaaatatggaaataaatagtagttgtcaaaatacaagagagttttgaacctgatgaaatgcaaaatacatattatacgttttgctcccatat |
8342842 |
T |
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| Q |
264 |
cctctttgtagtaaagccaaatcatcagagaaaacttgatctgagt |
309 |
Q |
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| T |
8342841 |
cctctttgtagtaaagccaaatcatcagagaaaacttgatctgagt |
8342796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 8343503 - 8343443
Alignment:
| Q |
12 |
tatactgagattttggcactataagcaagtgattgaaaaatctatattttaaggtgaaaat |
72 |
Q |
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| T |
8343503 |
tatactgagattttggcactataagcaagtgattgaaaaatctatattttaaggtgaaaat |
8343443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 25727 - 25661
Alignment:
| Q |
12 |
tatactgagattttggcactataagcaagtgattgaaaaatctatattttaaggtgaaaattagaca |
78 |
Q |
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| T |
25727 |
tatactgagatgtgggcactataagcaagttattgaaaagtttatactttaaggtgagaataagaca |
25661 |
T |
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