View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_high_36 (Length: 304)
Name: NF17434_high_36
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_high_36 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: scaffold0286 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 2321 - 2025
Alignment:
| Q |
1 |
tggaagagagagattgatgtcgttgtcacgttcagctttgttgaaaggggttgaagagaggagaacggaggcgtcgcagccgttagggaggaggcagtcg |
100 |
Q |
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| T |
2321 |
tggaagagagagattgatgtcgttgtcacgttcagctttgttgaaaggggttgaagagaggaggacggaggcgtcgcagccgttagggaggaggcagtcg |
2222 |
T |
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| Q |
101 |
tggaggaagagacggagagtggcggcggcggtggttggagattggatctgttttgaggttactgtttgttgaatgatttgttggaattgtggacatgttt |
200 |
Q |
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| T |
2221 |
tggaggaagagacggagagtggcggcagcggtggttggagattggatctgttttgaggttactgtttgttgaatgatttgttggaattgtggacatgttt |
2122 |
T |
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| Q |
201 |
gtttgtagtaatctaaggttagttttgattcggagatgttaaggttaatgatgatgttgaagaataagaagaatgacaacaatgtttttgatgatgt |
297 |
Q |
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| T |
2121 |
gtttgtagtaatctaaggttagttttgattcggagatgttaaggttaatgatgatgttgaagaataagaagaatgacaacaatgtttttgatgatgt |
2025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 2210219 - 2209923
Alignment:
| Q |
1 |
tggaagagagagattgatgtcgttgtcacgttcagctttgttgaaaggggttgaagagaggagaacggaggcgtcgcagccgttagggaggaggcagtcg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2210219 |
tggaagagagagattgatgtcgttgtcacgttcagctttgttgaaaggggttgaagagaggaggacggaggcgtcgcagccgttagggaggaggcagtcg |
2210120 |
T |
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| Q |
101 |
tggaggaagagacggagagtggcggcggcggtggttggagattggatctgttttgaggttactgtttgttgaatgatttgttggaattgtggacatgttt |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2210119 |
tggaggaagagacggagagtggcggcagcggtggttggagattggatctgttttgaggttactgtttgttgaatgatttgttggaattgtggacatgttt |
2210020 |
T |
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| Q |
201 |
gtttgtagtaatctaaggttagttttgattcggagatgttaaggttaatgatgatgttgaagaataagaagaatgacaacaatgtttttgatgatgt |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2210019 |
gtttgtagtaatctaaggttagttttgattcggagatgttaaggttaatgatgatgttgaagaataagaagaatgacaacaatgtttttgatgatgt |
2209923 |
T |
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