View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_high_40 (Length: 280)
Name: NF17434_high_40
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_high_40 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 67 - 279
Target Start/End: Complemental strand, 37211412 - 37211200
Alignment:
| Q |
67 |
ttaaccatcatgaatgtgccttatagatttgcttaaatttctgcagaataaagtaaaaagactagtgagcattgaggttcttgaagtagttgtgttgtta |
166 |
Q |
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| T |
37211412 |
ttaaccatcatgaatgtgccttacagatttgcttaaatttctgcagaataaagtaaaaagactagtgagcattgaggttcttgaagtagttgtgttgtta |
37211313 |
T |
|
| Q |
167 |
tgctttgttgggctaataaagtctaagaaaaatagcttttgataaccatatggttggacatctgtttgaaaatgtattggaagctgattgattgttttct |
266 |
Q |
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| T |
37211312 |
tgctttgttgggctaataaagtctaagaaaaatagcttttgataaccatatggttggacatctgtttgaaaatgtattggaagttgattgattgttttct |
37211213 |
T |
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| Q |
267 |
tactagttgagat |
279 |
Q |
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||||||||||||| |
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| T |
37211212 |
tactagttgagat |
37211200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 99 - 198
Target Start/End: Complemental strand, 37216985 - 37216886
Alignment:
| Q |
99 |
ttaaatttctgcagaataaagtaaaaagactagtgagcattgaggttcttgaagtagttgtgttgttatgctttgttgggctaataaagtctaagaaaaa |
198 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||| |||||| |
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| T |
37216985 |
ttaaatttctgcagaataaagtaaaaacactagtgagcattgaggttcttgaagtagttgtgtttttatgctttgtttggctgataaagtctaggaaaaa |
37216886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 139 - 248
Target Start/End: Complemental strand, 37201931 - 37201822
Alignment:
| Q |
139 |
tgaggttcttgaagtagttgtgttgttatgctttgttgggctaataaagtctaagaaaaatagcttttgataaccatatggttggacatctgtttgaaaa |
238 |
Q |
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| T |
37201931 |
tgaggttctagaagtagctgtgttgttatgctttgttgggctgataaagtataacaaaaacagattctactcaccatctggttggacatctgtttgaaaa |
37201832 |
T |
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| Q |
239 |
tgtattggaa |
248 |
Q |
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|||||||||| |
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| T |
37201831 |
tgtattggaa |
37201822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 37172642 - 37172545
Alignment:
| Q |
103 |
atttctgcagaataaagtaaaaagact--agtgagcattgaggttcttgaagtagttgtgttgttatgctttgttgggctaataaagtctaagaaaaa |
198 |
Q |
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||||||||| ||||||||||||| ||| || ||||||||||||| ||||||||||||||||| |||||||||||| | | ||||||||||||||||| |
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| T |
37172642 |
atttctgcataataaagtaaaaacactttagcgagcattgaggtttttgaagtagttgtgttgctatgctttgttgtgttgataaagtctaagaaaaa |
37172545 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 176
Target Start/End: Complemental strand, 37182918 - 37182883
Alignment:
| Q |
141 |
aggttcttgaagtagttgtgttgttatgctttgttg |
176 |
Q |
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| T |
37182918 |
aggttcttgaagtagttgtgttgttatgctttgttg |
37182883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 176
Target Start/End: Complemental strand, 37194050 - 37194015
Alignment:
| Q |
141 |
aggttcttgaagtagttgtgttgttatgctttgttg |
176 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
37194050 |
aggttcttgaagtagttgtgttgttatgctttgttg |
37194015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 37202066 - 37202028
Alignment:
| Q |
8 |
acctgattgatcatttaaaatgtttgcatgagatgagtg |
46 |
Q |
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||||| ||||||||| ||||||||||||||||||||||| |
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| T |
37202066 |
acctggttgatcattaaaaatgtttgcatgagatgagtg |
37202028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 37217100 - 37217058
Alignment:
| Q |
8 |
acctgattgatcatttaaaatgtttgcatgagatgagtggtat |
50 |
Q |
| |
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||||||||||||| | ||||||| ||||||||||||||||||| |
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| T |
37217100 |
acctgattgatcactaaaaatgtctgcatgagatgagtggtat |
37217058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 192
Target Start/End: Original strand, 414932 - 415028
Alignment:
| Q |
99 |
ttaaatttctgcagaataaagtaaaaagac----tagtgagcattgaggttcttgaagtagttgtgttgttatgctttgttgggctaataaagtctaa |
192 |
Q |
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|||||| | |||||||||||||||||| || |||||||||||||||||||||| |||||||| |||| | ||||||||||||| ||||||||||| |
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| T |
414932 |
ttaaatctatgcagaataaagtaaaaaaacaatctagtgagcattgaggttcttga-gtagttgttttgtaaagctttgttgggctgataaagtctaa |
415028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 7527097 - 7527026
Alignment:
| Q |
99 |
ttaaatttctgcagaataaagtaaaaagact--agtgagcattgaggttcttgaagtagttgtgttgttatg |
168 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||| |||| ||||| |
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| T |
7527097 |
ttaaatttctgcagaacaaagtaaaaacactctagtgagcattgaggttcttgaagtagttatgttcttatg |
7527026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 414825 - 414864
Alignment:
| Q |
11 |
tgattgatcatttaaaatgtttgcatgagatgagtggtat |
50 |
Q |
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|||||||||||| |||||||||||||||||||| |||||| |
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| T |
414825 |
tgattgatcattaaaaatgtttgcatgagatgattggtat |
414864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 239
Target Start/End: Complemental strand, 7526988 - 7526960
Alignment:
| Q |
211 |
accatatggttggacatctgtttgaaaat |
239 |
Q |
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| T |
7526988 |
accatatggttggacatctgtttgaaaat |
7526960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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