View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_high_54 (Length: 239)
Name: NF17434_high_54
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_high_54 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 38610534 - 38610740
Alignment:
| Q |
1 |
caattaactataacaaaacaaccaaaagtggatcttctttggtctaacttttaactaacaacaaaatgtcaagttgtatttttactaaatcaggttttaa |
100 |
Q |
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| T |
38610534 |
caattaactataacaaaacaaccaaaagtggatcttctttggtctaacttttgactaacaacaaaatgtcaagttgtatttttactaaatcaggttttaa |
38610633 |
T |
|
| Q |
101 |
agatggcatactcgtaagaatctagttagtaaagacttcggcttaggaacatcataatcacactcaagtccaaacaatcatgataattatttgtatcatg |
200 |
Q |
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| T |
38610634 |
agatggcatactcgtaaaaatctagttagtaaagacttcggcttaggaacatcataatcacactcaagtccaaacaatcatgataattatttgtatcatg |
38610733 |
T |
|
| Q |
201 |
ctgtaat |
207 |
Q |
| |
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||||||| |
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| T |
38610734 |
ctgtaat |
38610740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 38795319 - 38795525
Alignment:
| Q |
1 |
caattaactataacaaaacaaccaaaagtggatcttctttggtctaacttttaactaacaacaaaatgtcaagttgtatttttactaaatcaggttttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38795319 |
caattaactataacaaaacaaccaaaagtggatcttctttggtctaacttttgactaacaacaaaatgtcaagttgtatttttactaaatcaggttttaa |
38795418 |
T |
|
| Q |
101 |
agatggcatactcgtaagaatctagttagtaaagacttcggcttaggaacatcataatcacactcaagtccaaacaatcatgataattatttgtatcatg |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38795419 |
agatggcatactcgtaaaaatctagttagtaaagacttcggcttaggaacatcataatcacactcaagtccaaacaatcatgataattatttgtatcatg |
38795518 |
T |
|
| Q |
201 |
ctgtaat |
207 |
Q |
| |
|
||||||| |
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|
| T |
38795519 |
ctgtaat |
38795525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 34730020 - 34730207
Alignment:
| Q |
13 |
acaaaacaaccaaaagtggatcttctttggtctaacttttaactaacaacaaaatgtcaagttgtatttttactaaatcaggttttaaaga-tggcatac |
111 |
Q |
| |
|
|||||||||| |||||||||| ||||||| |||| ||| ||||||| |||||| | ||||||| || |||| ||||||||||||||||| |||||||| |
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| T |
34730020 |
acaaaacaactaaaagtggatgttctttgatctatgtttcgactaacagcaaaatttaaagttgttttattacaaaatcaggttttaaagaatggcatac |
34730119 |
T |
|
| Q |
112 |
tcgtaagaatctagttagtaaagacttcggcttaggaacatcataatcacactcaagtccaaacaatcatgataattatttgtatcat |
199 |
Q |
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|| || ||||||||||||||||||||| ||||||| || |||||||||||||||| ||| |||||||||||| |||||||||||||| |
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| T |
34730120 |
tcatacaaatctagttagtaaagacttcagcttaggcacgtcataatcacactcaattccgaacaatcatgatcattatttgtatcat |
34730207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 34725968 - 34726104
Alignment:
| Q |
19 |
caaccaaaagtggatcttctttggtctaacttttaactaacaacaaaatgtcaagttgtatttttactaaatcaggttttaaaga-tggcatactcgtaa |
117 |
Q |
| |
|
||||||||||||||| |||| |||||||| |||| ||||||| ||| || |||||||||||||||||||||||||||||| || |||| |||| || |
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| T |
34725968 |
caaccaaaagtggatgttctctggtctaagttttgactaacagcaatttg--aagttgtatttttactaaatcaggttttaacgaatggcgcactcatac |
34726065 |
T |
|
| Q |
118 |
gaatctagttagtaaagacttcggcttaggaacatcata |
156 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |
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|
| T |
34726066 |
aaatctagttagtaaagacttcggcttaggaacgtcata |
34726104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 34720852 - 34720908
Alignment:
| Q |
164 |
tcaagtccaaacaatcatgataattatttgtatcatgctgtaatcaggggtatgcta |
220 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||| | |||||||| |
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| T |
34720852 |
tcaagtccaaacaatcacgataattatttgtatcatgatgtaatcaagagtatgcta |
34720908 |
T |
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