View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17434_high_55 (Length: 234)

Name: NF17434_high_55
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17434_high_55
NF17434_high_55
[»] chr2 (10 HSPs)
chr2 (14-217)||(6988615-6988834)
chr2 (36-109)||(15571608-15571681)
chr2 (36-109)||(18454420-18454493)
chr2 (42-113)||(12522845-12522916)
chr2 (36-109)||(18453236-18453309)
chr2 (36-98)||(18454234-18454296)
chr2 (36-109)||(14493175-14493248)
chr2 (36-111)||(12522985-12523060)
chr2 (45-96)||(18453577-18453628)
chr2 (36-109)||(18454068-18454141)
[»] chr6 (39 HSPs)
chr6 (42-113)||(639231-639302)
chr6 (42-113)||(639397-639468)
chr6 (35-111)||(640082-640158)
chr6 (36-109)||(29616515-29616588)
chr6 (42-113)||(29616140-29616211)
chr6 (42-113)||(34961918-34961989)
chr6 (36-109)||(30405516-30405589)
chr6 (42-109)||(2190888-2190955)
chr6 (36-106)||(638720-638790)
chr6 (47-113)||(2190543-2190609)
chr6 (36-113)||(30404787-30404864)
chr6 (36-112)||(30404974-30405051)
chr6 (42-111)||(30405143-30405212)
chr6 (36-107)||(1578088-1578159)
chr6 (36-111)||(7655505-7655580)
chr6 (42-109)||(12600783-12600850)
chr6 (58-109)||(29616683-29616734)
chr6 (36-99)||(34961406-34961469)
chr6 (56-113)||(639895-639951)
chr6 (42-99)||(1577608-1577665)
chr6 (36-109)||(30405702-30405775)
chr6 (42-94)||(30405345-30405397)
chr6 (42-109)||(24037058-24037125)
chr6 (42-101)||(34967725-34967784)
chr6 (75-113)||(2190737-2190775)
chr6 (36-97)||(7655690-7655751)
chr6 (36-97)||(7656043-7656104)
chr6 (36-109)||(30401582-30401655)
chr6 (36-113)||(34961732-34961809)
chr6 (45-109)||(2192094-2192158)
chr6 (36-95)||(639747-639806)
chr6 (36-90)||(1578271-1578325)
chr6 (57-99)||(12600959-12601001)
chr6 (67-113)||(29613736-29613782)
chr6 (42-111)||(7655343-7655412)
chr6 (72-109)||(29616330-29616367)
chr6 (36-109)||(34962108-34962181)
chr6 (42-106)||(1577924-1577988)
chr6 (45-109)||(24035784-24035848)
[»] chr1 (11 HSPs)
chr1 (36-113)||(48739442-48739519)
chr1 (36-113)||(48739610-48739687)
chr1 (36-113)||(24665752-24665829)
chr1 (37-109)||(24665918-24665990)
chr1 (36-111)||(41468036-41468111)
chr1 (36-111)||(41468456-41468531)
chr1 (36-111)||(41468276-41468351)
chr1 (57-113)||(48739796-48739852)
chr1 (36-90)||(24666103-24666157)
chr1 (57-98)||(48234533-48234574)
chr1 (36-80)||(48234385-48234429)
[»] chr7 (25 HSPs)
chr7 (36-99)||(8948160-8948223)
chr7 (36-113)||(44213590-44213667)
chr7 (47-113)||(13909982-13910048)
chr7 (42-109)||(13910327-13910394)
chr7 (42-109)||(13930377-13930444)
chr7 (36-113)||(13910137-13910214)
chr7 (36-99)||(35466998-35467061)
chr7 (53-114)||(8947463-8947524)
chr7 (42-99)||(8947829-8947886)
chr7 (36-107)||(15738216-15738287)
chr7 (36-98)||(8948327-8948389)
chr7 (67-113)||(13930539-13930585)
chr7 (36-109)||(13914408-13914480)
chr7 (42-99)||(15738710-15738767)
chr7 (36-109)||(35466822-35466895)
chr7 (42-99)||(35467164-35467221)
chr7 (54-99)||(35467330-35467375)
chr7 (36-98)||(8947295-8947357)
chr7 (45-109)||(13914931-13914995)
chr7 (42-109)||(13914579-13914646)
chr7 (36-91)||(13914776-13914831)
chr7 (36-106)||(8947119-8947189)
chr7 (36-90)||(15738050-15738104)
chr7 (36-113)||(35466652-35466729)
chr7 (42-106)||(15738387-15738451)
[»] chr8 (26 HSPs)
chr8 (36-106)||(23484138-23484208)
chr8 (36-109)||(23484693-23484766)
chr8 (47-109)||(23484321-23484383)
chr8 (47-113)||(23484503-23484569)
chr8 (36-109)||(124071-124144)
chr8 (36-109)||(124461-124534)
chr8 (47-113)||(16534682-16534748)
chr8 (36-109)||(34907567-34907639)
chr8 (42-109)||(124651-124718)
chr8 (42-113)||(32058767-32058838)
chr8 (36-109)||(23483783-23483856)
chr8 (36-113)||(23484875-23484952)
chr8 (36-91)||(23483967-23484022)
chr8 (42-109)||(32058933-32059000)
chr8 (42-109)||(34907222-34907289)
chr8 (36-113)||(23480053-23480130)
chr8 (36-109)||(34907401-34907474)
chr8 (42-109)||(16535027-16535094)
chr8 (42-109)||(32059524-32059591)
chr8 (36-113)||(124831-124908)
chr8 (45-114)||(32059361-32059430)
chr8 (82-113)||(9874270-9874301)
chr8 (36-111)||(32059093-32059168)
chr8 (47-113)||(9874436-9874502)
chr8 (75-113)||(16534876-16534914)
chr8 (45-109)||(16535872-16535936)
[»] chr4 (23 HSPs)
chr4 (36-109)||(13739966-13740039)
chr4 (36-109)||(13743239-13743312)
chr4 (36-111)||(15780571-15780646)
chr4 (42-109)||(43265197-43265264)
chr4 (36-113)||(43265359-43265436)
chr4 (36-109)||(43265712-43265785)
chr4 (45-109)||(43265043-43265107)
chr4 (42-109)||(13742876-13742943)
chr4 (45-109)||(15780782-15780846)
chr4 (54-109)||(13743425-13743480)
chr4 (42-109)||(15781317-15781383)
chr4 (42-91)||(43265564-43265613)
chr4 (36-109)||(43265878-43265951)
chr4 (36-99)||(47324588-47324651)
chr4 (42-109)||(47325078-47325145)
chr4 (36-99)||(47339384-47339447)
chr4 (42-109)||(47339874-47339941)
chr4 (36-98)||(47324091-47324153)
chr4 (36-98)||(47338887-47338949)
chr4 (36-113)||(15780944-15781021)
chr4 (42-91)||(15781169-15781218)
chr4 (36-109)||(47324412-47324485)
chr4 (36-109)||(47339208-47339281)
[»] scaffold0049 (7 HSPs)
scaffold0049 (36-109)||(5430-5503)
scaffold0049 (36-99)||(5254-5317)
scaffold0049 (36-113)||(5612-5689)
scaffold0049 (36-113)||(5763-5840)
scaffold0049 (36-96)||(5073-5133)
scaffold0049 (36-109)||(4874-4947)
scaffold0049 (36-104)||(5939-6007)
[»] chr3 (13 HSPs)
chr3 (36-109)||(49791194-49791267)
chr3 (36-113)||(49791835-49791912)
chr3 (43-99)||(11763327-11763383)
chr3 (36-91)||(11763501-11763556)
chr3 (46-99)||(11763825-11763878)
chr3 (42-114)||(51858248-51858319)
chr3 (36-103)||(11762971-11763038)
chr3 (36-99)||(11763141-11763204)
chr3 (42-109)||(49791028-49791095)
chr3 (36-106)||(51857885-51857955)
chr3 (36-98)||(51858080-51858142)
chr3 (42-99)||(49791651-49791708)
chr3 (56-99)||(11763659-11763702)
[»] chr5 (7 HSPs)
chr5 (42-113)||(11234921-11234992)
chr5 (42-109)||(11235255-11235322)
chr5 (42-109)||(22256610-22256677)
chr5 (36-90)||(11234747-11234801)
chr5 (36-107)||(11234581-11234652)
chr5 (58-104)||(11234437-11234483)
chr5 (75-113)||(22256459-22256497)
[»] scaffold0031 (3 HSPs)
scaffold0031 (42-109)||(82240-82307)
scaffold0031 (75-113)||(82089-82127)
scaffold0031 (45-109)||(83987-84051)
[»] scaffold0268 (3 HSPs)
scaffold0268 (47-113)||(4978-5044)
scaffold0268 (75-113)||(5172-5210)
scaffold0268 (42-109)||(5323-5390)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 6988615 - 6988834
Alignment:
Q  14 cacagacacggcaccg-cacaggtccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttga 112  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  6988615 cacagacacggcaccggcacaggtccaactactttgactacaagattatttcatttagggtaagagttgtgagtttgatcagtcgttttgaaatctttga 6988714  T
Q  113 aacggcaccggcacaggcgaacacataagtgattgaatgtaatcaaatttatcggtgcctg---------------aggcaatgaacacatattcaatct 197  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||               ||||||||| ||||||||||||||    
T  6988715 aacggcaccggcacaggtgaacacataagtgattgaatataatcaaacttatcggtgcctgacactaacacgtgtcaggcaatgagcacatattcaatct 6988814  T
Q  198 aaagtgtcgatgtgacatac 217  Q
    ||||||||||||||||||||    
T  6988815 aaagtgtcgatgtgacatac 6988834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 15571608 - 15571681
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| |||||||||| ||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||    
T  15571608 tccaagtactttgactccaagattctttcagttagggtaagagttgtgagtttgattagtcgttttgaaatctt 15571681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 18454420 - 18454493
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| |||||||||| ||||||||||||| |||||||||||||| |||||||||| ||||||| ||| |||||    
T  18454420 tccaagtactttgactccaagattctttcagttagggtaagagttgtgagtttgatgagtcgttatgacatctt 18454493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 12522845 - 12522916
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    |||||| ||| ||| ||||||||| |||||||||||||| ||| |||||||||||||||||| |||||||||    
T  12522845 tactttcactccaaaattctttcagttagggtaagagttgtgaatttgatcagtcgttttgacatctttgaa 12522916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 18453236 - 18453309
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| |||||||||| ||||||| |||||||||||||||||||| |||||||||| | ||||| ||| |||||    
T  18453236 tccaagtactttgactgcaagattatttcaattagggtaagagttgtgagtttgatgattcgttatgacatctt 18453309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 18454234 - 18454296
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgt 98  Q
    ||||| |||||| ||| ||||||||||||| |||||||||||||| ||| ||||| |||||||    
T  18454234 tccaagtactttcactccaagattctttcagttagggtaagagttgtgattttgaccagtcgt 18454296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 14493175 - 14493248
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| |||||| |||  ||||||||||||  ||||||||||||| ||||||||||||||| | |||| |||||    
T  14493175 tccaagtactttcactctaagattctttcacgtagggtaagagttttgagtttgatcagtcatcttgacatctt 14493248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 12522985 - 12523060
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttg 111  Q
    ||||| |||||| ||| |||  |||| ||| ||||||||||| || |||||||||||||||||| |||| ||||||    
T  12522985 tccaagtactttcactccaaagttctgtcagttagggtaagaattttgagtttgatcagtcgttctgaagtctttg 12523060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 18453577 - 18453628
Alignment:
Q  45 tttgactacaagattctttcaattagggtaagagttatgagtttgatcagtc 96  Q
    ||||||| |||||||||||||||| ||||||||||| | |||||||| ||||    
T  18453577 tttgactgcaagattctttcaatttgggtaagagttgtaagtttgatgagtc 18453628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 18454068 - 18454141
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| |||||||||||||  ||||||||| || ||||||||||| | ||||| |  ||||||| |||||||||    
T  18454068 tccaagtactttgactacattattctttcagtttgggtaagagttgtaagtttaaagagtcgttctgaaatctt 18454141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 639302 - 639231
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  639302 tactttgactacaagattctttcagttagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 639231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 639468 - 639397
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    |||||||||||||||||||||||| |||||||||||||| | ||||||| ||||||||||||||||||||||    
T  639468 tactttgactacaagattctttcagttagggtaagagttgtaagtttgaacagtcgttttgaaatctttgaa 639397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 640158 - 640082
Alignment:
Q  35 gtccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttg 111  Q
    |||||| |||||||||| |||||||||| |||||| |||||||||| |||||||||| |||||||||||||||||||    
T  640158 gtccaagtactttgacttcaagattcttccaattaaggtaagagttgtgagtttgatgagtcgttttgaaatctttg 640082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 29616588 - 29616515
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| |||| ||||| ||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||    
T  29616588 tccaagtactctgactccaagattcttttagttagggtaagagttgtgagtttgatcagtcgttttgaaatctt 29616515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 29616211 - 29616140
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    |||||||||| ||||||||||| | |||||||||||||| |||||||||| |||||||||||||| ||||||    
T  29616211 tactttgactccaagattcttttagttagggtaagagttgtgagtttgataagtcgttttgaaatatttgaa 29616140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 34961989 - 34961918
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    |||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||  ||| |||||||||    
T  34961989 tactttgactccaagattctttcagttagggtaagagttgtgagtttgatcagtcgtgctgacatctttgaa 34961918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 30405589 - 30405516
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| |||||||||| ||||||||||||| |||||||||||||| |||||||||| ||||||| ||| |||||    
T  30405589 tccaagtactttgactccaagattctttcagttagggtaagagttgtgagtttgattagtcgttgtgacatctt 30405516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 2190888 - 2190955
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    |||||||||| ||| ||||||| | ||||||||||||||  |||||||||||||||||||||||||||    
T  2190888 tactttgactccaatattctttaagttagggtaagagttgcgagtttgatcagtcgttttgaaatctt 2190955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 638790 - 638720
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaat 106  Q
    ||||||||||||||||||| ||||||||||  ||||||||||||| ||||||||||||  |||||| ||||    
T  638790 tccaactactttgactacacgattctttcagatagggtaagagttgtgagtttgatcacccgttttaaaat 638720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 2190543 - 2190609
Alignment:
Q  47 tgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    ||||| ||| ||||||| | |||||||||||||| |||||||||||||||||||| |||||||||||    
T  2190543 tgactccaatattctttaagttagggtaagagttgtgagtttgatcagtcgttttaaaatctttgaa 2190609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 30404864 - 30404787
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    ||||| |||| || || ||||||||||||| |||||||||||||| |||||||||| ||| |||||||||| ||||||    
T  30404864 tccaagtactctgcctccaagattctttcagttagggtaagagttgtgagtttgataagttgttttgaaatatttgaa 30404787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 30405051 - 30404974
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgtt-ttgaaatctttga 112  Q
    |||||||||||||||| || |||||||||| |||||||||||||| ||||| |||| ||||||| |||| ||||||||    
T  30405051 tccaactactttgactccatgattctttcagttagggtaagagttgtgagtctgataagtcgttattgacatctttga 30404974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 30405212 - 30405143
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttg 111  Q
    |||||||||| ||||||||||| | |||||||||||||| |||||||||| ||||||| |||| ||||||    
T  30405212 tactttgactccaagattcttttagttagggtaagagttgtgagtttgattagtcgttctgaagtctttg 30405143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 1578159 - 1578088
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatc 107  Q
    ||||| |||||||||||||||||||||||| || ||||||||||| ||| |||||  ||||||| |||||||    
T  1578159 tccaagtactttgactacaagattctttcagttggggtaagagttgtgactttgaagagtcgttatgaaatc 1578088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 7655505 - 7655580
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttg 111  Q
    ||||| |||||||||| |||||||||||||  ||||| ||||||| |||||||||||||||||  |||||| ||||    
T  7655505 tccaagtactttgactccaagattctttcagctagggcaagagttgtgagtttgatcagtcgtgatgaaatatttg 7655580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 12600850 - 12600783
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    |||||||||||||||||||||||| ||| |||||||| | ||||||||||||||| || ||| |||||    
T  12600850 tactttgactacaagattctttcagttatggtaagagctgtgagtttgatcagtcattatgacatctt 12600783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 29616734 - 29616683
Alignment:
Q  58 ttctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    |||||||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  29616734 ttctttcagttagggtaagagttgtgagtttcatcagtcgttttgaaatctt 29616683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 34961469 - 34961406
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgtt 99  Q
    ||||| |||||||| | ||||||||||| | |||||||||||||| ||||||||||||||||||    
T  34961469 tccaagtactttgattccaagattcttttagttagggtaagagttgtgagtttgatcagtcgtt 34961406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 639951 - 639895
Alignment:
Q  56 gattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    |||||||||| || ||||||||||| ||||||||||||||||||| ||||||||||||    
T  639951 gattctttcagtt-gggtaagagttttgagtttgatcagtcgtttcgaaatctttgaa 639895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 1577665 - 1577608
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgtt 99  Q
    |||||| |||| |||||||||||| |||||||||||||| ||||| ||||||||||||    
T  1577665 tactttcactataagattctttcagttagggtaagagttgtgagtctgatcagtcgtt 1577608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 30405775 - 30405702
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| ||||||| || ||||||||||||| |||||||||||||| | |||||||| ||||||| ||| |||||    
T  30405775 tccaagtactttgcctccaagattctttcagttagggtaagagttgtcagtttgattagtcgttgtgacatctt 30405702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 30405397 - 30405345
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcag 94  Q
    |||||||||| ||||||||||||| ||||| |||||||| |||||||||||||    
T  30405397 tactttgactccaagattctttcagttaggctaagagttgtgagtttgatcag 30405345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 24037125 - 24037058
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    |||||||||| ||| ||||||| | || |||||||||||  |||||| ||||||||||||||||||||    
T  24037125 tactttgactccaatattctttaagttggggtaagagttgcgagtttaatcagtcgttttgaaatctt 24037058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 34967784 - 34967725
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgtttt 101  Q
    |||||||||| ||||||||||||| ||||| ||| |||| | ||||||||||||||||||    
T  34967784 tactttgactccaagattctttcagttaggttaatagttgtaagtttgatcagtcgtttt 34967725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 2190737 - 2190775
Alignment:
Q  75 agagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  2190737 agagttgtgagtttgatcagtcgttttgaaatctttgaa 2190775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 7655690 - 7655751
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcg 97  Q
    ||||| |||||| ||| |||||||||||||  ||||| ||||||| ||||||||||||||||    
T  7655690 tccaagtactttcactccaagattctttcagctagggcaagagttgtgagtttgatcagtcg 7655751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 7656043 - 7656104
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcg 97  Q
    ||||| |||||||||| |||| ||||||||  ||||| ||||||| ||||||||||||||||    
T  7656043 tccaagtactttgactccaaggttctttcagctagggcaagagttgtgagtttgatcagtcg 7656104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 30401655 - 30401582
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| |||||||||| ||| ||||||||| || ||||||||||| ||| |||||| ||||||| ||| |||||    
T  30401655 tccaaatactttgactccaacattctttcagttggggtaagagttgtgattttgattagtcgttgtgacatctt 30401582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 34961809 - 34961732
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    ||||| |||||||||| ||||||||||| | ||||||||| |||| | ||||||||||| |||| ||| || ||||||    
T  34961809 tccaagtactttgactccaagattcttttagttagggtaatagttgtaagtttgatcagccgttatgacatatttgaa 34961732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 2192094 - 2192158
Alignment:
Q  45 tttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||||| ||| ||||||||| |||||| |||| || |||||||||| | |||||||||||||||    
T  2192094 tttgactccaatattctttcagttagggcaagaattttgagtttgattattcgttttgaaatctt 2192158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 639806 - 639747
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagt 95  Q
    ||||| |||||||||| ||||||||||||| |||||| | ||| | ||||||||||||||    
T  639806 tccaagtactttgactccaagattctttcagttagggaatgagatgtgagtttgatcagt 639747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 1578325 - 1578271
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttga 90  Q
    ||||| ||||||||||||| |||||||||| || || |||||||| |||||||||    
T  1578325 tccaagtactttgactacatgattctttcagttgggataagagttgtgagtttga 1578271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 12601001 - 12600959
Alignment:
Q  57 attctttcaattagggtaagagttatgagtttgatcagtcgtt 99  Q
    ||||||||| |||| ||||||||| ||||||||||||||||||    
T  12601001 attctttcagttagagtaagagttgtgagtttgatcagtcgtt 12600959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 29613782 - 29613736
Alignment:
Q  67 ttagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    |||||||||||||| |||||||||| ||||||| ||| |||||||||    
T  29613782 ttagggtaagagttgtgagtttgattagtcgttatgacatctttgaa 29613736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 7655343 - 7655412
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttg 111  Q
    |||||||||| ||||||||||| |  ||| | ||||||| |||||||||||||||||  |||||| ||||    
T  7655343 tactttgactccaagattctttaagctagagcaagagttgtgagtttgatcagtcgtgatgaaatatttg 7655412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 29616367 - 29616330
Alignment:
Q  72 gtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  29616367 gtaagagttgtgagtttgaccagtcgttttgaaatctt 29616330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 34962181 - 34962108
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| |||||||||| | | ||||||||  |||||||||||||| | ||||||||| |||||| | |||||||    
T  34962181 tccaagtactttgactcccaaattctttcggttagggtaagagttgtaagtttgatcggtcgttctaaaatctt 34962108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 1577988 - 1577924
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaat 106  Q
    |||||| ||||||||||||||||| | |||| ||||||| ||| |||||  ||||||| ||||||    
T  1577988 tactttcactacaagattctttcagtgagggaaagagttgtgactttgaagagtcgttctgaaat 1577924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 24035848 - 24035784
Alignment:
Q  45 tttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||||| ||| ||||||||| |||||  |||| || |||||||||| | |||||||||||||||    
T  24035848 tttgactccaatattctttcagttaggtcaagaattttgagtttgattattcgttttgaaatctt 24035784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 48739519 - 48739442
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    ||||| ||||||||||  |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  48739519 tccaagtactttgactcgaagattctttcagttagggtaagagttgtgagtttgatcagtcgttttgaaatctttgaa 48739442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 48739687 - 48739610
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    ||||| |||||||||| ||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  48739687 tccaagtactttgactccaagactctttcagttagggtaagagttgtgagtttgatcagtcgttttgaaatctttgaa 48739610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 24665752 - 24665829
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    ||||| |||||||||||||||||||||||| ||||| |||||||| |||||||||| ||||||| |||||||||||||    
T  24665752 tccaagtactttgactacaagattctttcagttaggctaagagttgtgagtttgatgagtcgttctgaaatctttgaa 24665829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 24665918 - 24665990
Alignment:
Q  37 ccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    |||| |||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  24665918 ccaagtactttcactactagattctttcaattacggtaagagttatgagtttgatcagtcgttctgaaatctt 24665990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 41468111 - 41468036
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttg 111  Q
    ||||| |||||||||| ||||||||||| | |||||| ||||||| ||||||| |||||||||  |||||||||||    
T  41468111 tccaagtactttgactccaagattcttttagttagggcaagagttgtgagtttcatcagtcgtgatgaaatctttg 41468036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 41468531 - 41468456
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttg 111  Q
    ||||| |||||| ||| ||||||||||| | |||||| ||||||| |||||||||||||||||  |||||||||||    
T  41468531 tccaattactttaactccaagattcttttagttagggcaagagttgtgagtttgatcagtcgtgatgaaatctttg 41468456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 41468351 - 41468276
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttg 111  Q
    ||||| |||||||||| ||||||||||| | |||||| ||||||| ||||| | |||||||||  |||||||||||    
T  41468351 tccaagtactttgactccaagattcttttagttagggcaagagttgtgagtatcatcagtcgtgatgaaatctttg 41468276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 48739852 - 48739796
Alignment:
Q  57 attctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    ||||||||| ||| ||||||| ||||||||||||||||||||  ||| |||||||||    
T  48739852 attctttcagttatggtaagaattatgagtttgatcagtcgtgctgacatctttgaa 48739796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 24666103 - 24666157
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttga 90  Q
    ||||| ||||||||||  |||||||||||| || ||||||||||| |||||||||    
T  24666103 tccaagtactttgactctaagattctttcagttggggtaagagttgtgagtttga 24666157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 48234574 - 48234533
Alignment:
Q  57 attctttcaattagggtaagagttatgagtttgatcagtcgt 98  Q
    ||||||||| ||| |||||||||| |||||||||||||||||    
T  48234574 attctttcagttatggtaagagttgtgagtttgatcagtcgt 48234533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 48234429 - 48234385
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagtt 80  Q
    ||||| |||||||||| ||||||||||||| |||| |||||||||    
T  48234429 tccaagtactttgactccaagattctttcagttagagtaagagtt 48234385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 8948223 - 8948160
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgtt 99  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8948223 tccaagtactttgactacaagattctttcaattagggtaagagttgtgagtttgatcagtcgtt 8948160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 44213667 - 44213590
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    ||||| |||||||||  |||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||    
T  44213667 tccaagtactttgacctcaagattcttccagttagggtaagagttatgagtttgatgagtcgttttgaaatctttgaa 44213590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 13909982 - 13910048
Alignment:
Q  47 tgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    ||||| ||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  13909982 tgactccaatattctttaagttagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 13910048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 13910327 - 13910394
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    |||||||||| ||| ||||||| | |||||||||||||| ||||||||||||||||||||||||||||    
T  13910327 tactttgactccaatattctttaagttagggtaagagttgtgagtttgatcagtcgttttgaaatctt 13910394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 13930444 - 13930377
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    |||||||||| ||||||||||||| |||||||||||||| |||||||||| ||||||| |||||||||    
T  13930444 tactttgactccaagattctttcagttagggtaagagttctgagtttgattagtcgttatgaaatctt 13930377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 13910137 - 13910214
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    ||||| |||| ||||| ||||||||||| | ||| |||||||||| |||||||||| |||||||||||||||||||||    
T  13910137 tccaattactctgactccaagattctttaagttaaggtaagagttgtgagtttgattagtcgttttgaaatctttgaa 13910214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 35467061 - 35466998
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgtt 99  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||  ||||||||| |||||||    
T  35467061 tccaagtactttgactacaagattctttcagttagggtaagagttgcgagtttgattagtcgtt 35466998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 8947524 - 8947463
Alignment:
Q  53 caagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaaa 114  Q
    ||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  8947524 caagattttttcagttaggataagagttgtgagtttgatcagtcgttttgaaatcttggaaa 8947463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 8947886 - 8947829
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgtt 99  Q
    ||||||||||| |||||||||||| ||| |||||||||| ||||||||||||||||||    
T  8947886 tactttgactataagattctttcagttaaggtaagagttgtgagtttgatcagtcgtt 8947829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 15738216 - 15738287
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatc 107  Q
    ||||| |||||||||||||||||||||||| || ||||||||||| ||| |||||  ||||||| |||||||    
T  15738216 tccaagtactttgactacaagattctttcagttggggtaagagttgtgactttgaagagtcgttatgaaatc 15738287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 8948389 - 8948327
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgt 98  Q
    ||||| |||||| | ||||| ||||||||| |||||||||||||| |||||||||||||||||    
T  8948389 tccaagtactttcaatacaatattctttcagttagggtaagagttgtgagtttgatcagtcgt 8948327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 13930585 - 13930539
Alignment:
Q  67 ttagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||    
T  13930585 ttagggtaagagttgtgagtttgatcagtcgttttgacatctttgaa 13930539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 13914408 - 13914480
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| |||||| |||||||||| |||||| ||| |||||||||| |||||||||||||||||| ||| |||||    
T  13914408 tccaagtactttaactacaagat-ctttcagttatggtaagagttgtgagtttgatcagtcgttatgacatctt 13914480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 15738710 - 15738767
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgtt 99  Q
    |||||| |||| |||||||||||| |||||||||||||| ||||| ||||||||||||    
T  15738710 tactttcactataagattctttcagttagggtaagagttgtgagtctgatcagtcgtt 15738767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 35466895 - 35466822
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| |||||||||| || |||||||||| |||||||||||||| ||||| |||| ||||||| ||| |||||    
T  35466895 tccaagtactttgactgcaggattctttcagttagggtaagagttctgagtctgatgagtcgttctgacatctt 35466822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 35467221 - 35467164
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgtt 99  Q
    |||||| ||| ||||||||||||| ||||| |||||||| ||||||||||||||||||    
T  35467221 tactttcactgcaagattctttcagttaggataagagttgtgagtttgatcagtcgtt 35467164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 35467375 - 35467330
Alignment:
Q  54 aagattctttcaattagggtaagagttatgagtttgatcagtcgtt 99  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||    
T  35467375 aagattctttcagttagggtaagagttgtgagtttgatcagtcgtt 35467330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 8947357 - 8947295
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgt 98  Q
    ||||| |||||| ||| |||||||| ||||  ||||||||||||| |||||||||||||||||    
T  8947357 tccaagtactttcactccaagattcgttcagatagggtaagagttgtgagtttgatcagtcgt 8947295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 13914931 - 13914995
Alignment:
Q  45 tttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||||| ||| ||||||||| |||||| |||| || |||||||||| | |||||||||||||||    
T  13914931 tttgactccaatattctttcagttagggcaagaattttgagtttgattattcgttttgaaatctt 13914995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 13914579 - 13914646
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    |||||||||| ||||||||||||  ||| |||||||||| |||||||||| ||| ||| ||| |||||    
T  13914579 tactttgactccaagattctttcggttaaggtaagagttgtgagtttgataagttgttatgacatctt 13914646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 13914776 - 13914831
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgat 91  Q
    ||||| |||||| ||| ||||||||||||| ||||||||| |||| ||||||||||    
T  13914776 tccaagtacttttactgcaagattctttcagttagggtaaaagttgtgagtttgat 13914831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 8947189 - 8947119
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaat 106  Q
    ||||| |||||| ||| ||||||||||||| ||||| |||||||  |||||||||  ||||||| ||||||    
T  8947189 tccaagtacttttactccaagattctttcagttaggataagagtcgtgagtttgaagagtcgttctgaaat 8947119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 15738050 - 15738104
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttga 90  Q
    ||||| ||||||||||||| |||||||||| || || |||||||| |||||||||    
T  15738050 tccaagtactttgactacatgattctttcagttgggataagagttgtgagtttga 15738104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 35466729 - 35466652
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    ||||| |||||| |||||||| ||  |||| |||||||||||||| ||||| |||| ||| ||| ||| |||||||||    
T  35466729 tccaaatactttcactacaaggtttgttcagttagggtaagagttgtgagtctgatgagtagttatgacatctttgaa 35466652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 15738387 - 15738451
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaat 106  Q
    |||||| ||||||||||||||||| | |||| ||||||| ||| |||||  ||||||| ||||||    
T  15738387 tactttcactacaagattctttcagtgagggaaagagttgtgactttgaagagtcgttctgaaat 15738451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 23484208 - 23484138
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaat 106  Q
    ||||| |||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  23484208 tccaagtactttgactccaagattctttcaattatggtaagagttgtgagtttgatcagtcgttttgaaat 23484138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 23484766 - 23484693
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| ||||||| || ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  23484766 tccaagtactttgtctccaagattctttcagttagggtaagagttgtgagtttgatcagtcgttttgaaatctt 23484693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 23484383 - 23484321
Alignment:
Q  47 tgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  23484383 tgactccaagattctttcagttagggtaagagttgtgagtttgatcagtcgttttgaaatctt 23484321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 23484569 - 23484503
Alignment:
Q  47 tgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    ||||| ||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||    
T  23484569 tgactccaagattctttcagttagggtaagagttgtgagttagatcagtcgttttgaaatctttgaa 23484503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 124071 - 124144
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| |||||| ||| ||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||    
T  124071 tccaagtactttcactgcaagattctttcagtcagggtaagagttatgagtttgatcagtcgttctgaaatctt 124144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 124461 - 124534
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| |||||||||| ||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||    
T  124461 tccaagtactttgactccaagattatttcagttagggtaagagttgtgagtttgatcagttgttttgaaatctt 124534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 16534682 - 16534748
Alignment:
Q  47 tgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    ||||| ||| ||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||    
T  16534682 tgactccaatattctttaagttagggtaagagttgtgagtttgatcagtcgttttgaaatctttgaa 16534748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 34907639 - 34907567
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| |||||||||| |||||| |||||| |||||||||||||| |||||||||| |||||||||||||||||    
T  34907639 tccaagtactttgactccaagat-ctttcagttagggtaagagttgtgagtttgattagtcgttttgaaatctt 34907567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 124651 - 124718
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    |||||||||| || | |||||||| |||||||||||||| |||||||||||||||||| |||||||||    
T  124651 tactttgactccagggttctttcagttagggtaagagttgtgagtttgatcagtcgttctgaaatctt 124718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 32058767 - 32058838
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    |||||| ||| ||||||||||||| || |||| |||||| |||||||||||||||||||||| |||||||||    
T  32058767 tacttttactccaagattctttcagttggggttagagttgtgagtttgatcagtcgttttgacatctttgaa 32058838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 23483856 - 23483783
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| |||||| ||||||||||||||| | ||||||||||||||||||||||||| ||| ||| | |||||||    
T  23483856 tccaagtactttaactacaagattcttttagttagggtaagagttatgagtttgatgagttgttctaaaatctt 23483783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 23484952 - 23484875
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    ||||| |||||||||| ||||||||||  | | |||||||||||| |||||||||| ||||| |||||||||||||||    
T  23484952 tccaagtactttgactccaagattcttctagtgagggtaagagttgtgagtttgatgagtcgctttgaaatctttgaa 23484875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 23484022 - 23483967
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgat 91  Q
    ||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||    
T  23484022 tccaagtactttgactacaagattcttttaataagggtaagagttgtgagtttgat 23483967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 32058933 - 32059000
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||||||||  |||||||||||| |||||||||||||| |||||||| | ||||||| |||||||||    
T  32058933 tactttgactcaaagattctttcagttagggtaagagttctgagtttgtttagtcgttatgaaatctt 32059000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 34907289 - 34907222
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    |||||||||| ||||||||||||| ||||| |||||||| |||||||||||| ||| | |||||||||    
T  34907289 tactttgactccaagattctttcagttaggttaagagttgtgagtttgatcaatcgctgtgaaatctt 34907222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 23480130 - 23480053
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    ||||| |||||||||| ||||||||||  | | ||||||| |||| |||||||||| ||||| |||||||||||||||    
T  23480130 tccaagtactttgactccaagattcttctagtaagggtaaaagttgtgagtttgatgagtcgctttgaaatctttgaa 23480053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 34907474 - 34907401
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| |||||||||| |||||||||||||  ||||| |||| || |||||||||||| | |||||||||||||    
T  34907474 tccaagtactttgactccaagattctttcaggtagggcaagaattttgagtttgatcaattgttttgaaatctt 34907401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 16535027 - 16535094
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||||||||  || ||||||| | ||||||||||||||  ||||||||| |||||||||||||||||    
T  16535027 tactttgactctaatattctttaagttagggtaagagttgcgagtttgattagtcgttttgaaatctt 16535094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 32059524 - 32059591
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    |||||||||| ||| ||||||||| ||||||||||| || |||||||||| ||||||| || ||||||    
T  32059524 tactttgactccaatattctttcagttagggtaagatttgtgagtttgatgagtcgttctgcaatctt 32059591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 124831 - 124908
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    ||||| ||| |||||| ||||||||||||  |||||| ||||||| |||||||||| ||| ||| ||| |||||||||    
T  124831 tccaagtacattgactccaagattctttctgttagggcaagagttgtgagtttgataagttgttatgacatctttgaa 124908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 32059361 - 32059430
Alignment:
Q  45 tttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaaa 114  Q
    ||||||| ||||||||||||| ||| |||||||||| |||||||||| || |||| | | ||||||||||    
T  32059361 tttgactccaagattctttcagttaaggtaagagttgtgagtttgataagacgttcttacatctttgaaa 32059430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 113
Target Start/End: Complemental strand, 9874301 - 9874270
Alignment:
Q  82 tgagtttgatcagtcgttttgaaatctttgaa 113  Q
    ||||||||||||||||||||||||||||||||    
T  9874301 tgagtttgatcagtcgttttgaaatctttgaa 9874270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 32059093 - 32059168
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttg 111  Q
    ||||| |||||| ||| |||  |||| ||| ||||||||||| || |||||||||||||||||| |||| ||||||    
T  32059093 tccaagtactttcactccaaagttctgtcagttagggtaagaattttgagtttgatcagtcgttctgaagtctttg 32059168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 9874502 - 9874436
Alignment:
Q  47 tgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    ||||| ||| ||||||| | || ||||||||||| |||||||||  |||||||||||||| ||||||    
T  9874502 tgactccaatattctttaagttcgggtaagagttgtgagtttgaggagtcgttttgaaatatttgaa 9874436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 16534876 - 16534914
Alignment:
Q  75 agagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  16534876 agagttgtgagtttgatcagtcgtttttaaatctttgaa 16534914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 16535872 - 16535936
Alignment:
Q  45 tttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||||| ||| ||||||||| |||||| |||| || |||| ||||| | |||||||||||||||    
T  16535872 tttgactccaatattctttcagttagggcaagaattttgagcttgattattcgttttgaaatctt 16535936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 13740039 - 13739966
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| |||||||||| ||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||    
T  13740039 tccaagtactttgactccaagattctttcagttagggtaagagttgtgagtttgattagtcgttttgaaatctt 13739966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 13743312 - 13743239
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| |||||||||| ||||||||||||| |||||| |||| || ||||||||||||||||||||||||||||    
T  13743312 tccaagtactttgactccaagattctttcagttagggcaagaattttgagtttgatcagtcgttttgaaatctt 13743239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 15780646 - 15780571
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttg 111  Q
    ||||| |||||||||| ||| ||||||||| |||||||||||||| || ||||||  |||||||||||||||||||    
T  15780646 tccaagtactttgactccaaaattctttcagttagggtaagagttgtgcgtttgaaaagtcgttttgaaatctttg 15780571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 43265264 - 43265197
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    |||||||||| ||||||||||||| |||||| |||| || |||||||||| |||||||||||||||||    
T  43265264 tactttgactccaagattctttcagttagggcaagaattttgagtttgattagtcgttttgaaatctt 43265197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 43265436 - 43265359
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    ||||| |||||| ||| ||||||||||||| |||| |||| |||| |||||||||||||||||| ||| |||||||||    
T  43265436 tccaagtactttcactgcaagattctttcagttagcgtaaaagttgtgagtttgatcagtcgttctgacatctttgaa 43265359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 43265785 - 43265712
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| |||||||||||||||||||||||| ||| |||||||| | || ||||||||||||||| ||| |||||    
T  43265785 tccaagtactttgactacaagattctttcagttatggtaagagctgtgcgtttgatcagtcgttatgacatctt 43265712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 43265107 - 43265043
Alignment:
Q  45 tttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    |||||||  |||||||||||| |||||||||||||| |||||||||||||||||| ||| |||||    
T  43265107 tttgactctaagattctttcagttagggtaagagttgtgagtttgatcagtcgttctgatatctt 43265043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 13742943 - 13742876
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    |||||||||| |||| |||||| | ||||| |||||||| |||||||||||||||| |||||||||||    
T  13742943 tactttgactccaaggttcttttagttaggttaagagttgtgagtttgatcagtcgctttgaaatctt 13742876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 15780846 - 15780782
Alignment:
Q  45 tttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||||| ||| ||||||||| |||||| |||| || |||||||||| |||||||||||||||||    
T  15780846 tttgactccaatattctttcagttagggcaagaattttgagtttgattagtcgttttgaaatctt 15780782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 13743480 - 13743425
Alignment:
Q  54 aagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    |||||||||||| ||||| |||||||| |||||||||||||||||| || ||||||    
T  13743480 aagattctttcagttaggttaagagttgtgagtttgatcagtcgttgtggaatctt 13743425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 15781383 - 15781317
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    |||||||||||||||| ||||||| ||| |||||||||| ||||||| |||||||||| ||| |||||    
T  15781383 tactttgactacaaga-tctttcagttatggtaagagttgtgagtttaatcagtcgttatgacatctt 15781317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 43265613 - 43265564
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgat 91  Q
    |||||||||||||||||||||||  ||| |||||||||| ||||||||||    
T  43265613 tactttgactacaagattctttcggttaaggtaagagttgtgagtttgat 43265564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 43265951 - 43265878
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| |||||| | ||||| ||||||||| |||| ||||| ||| |||||||||||||||||| ||| |||||    
T  43265951 tccaagtactttcaatacaatattctttcagttagagtaagcgttgtgagtttgatcagtcgttatgacatctt 43265878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 47324651 - 47324588
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgtt 99  Q
    ||||| |||||| ||| ||||||||||| | ||| ||||| ||||||||||||||| |||||||    
T  47324651 tccaagtactttcactgcaagattctttgagttaaggtaaaagttatgagtttgatgagtcgtt 47324588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 47325145 - 47325078
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    |||||| ||| ||||||||||| | |||||||||||||| ||||| |||| ||||||| ||| |||||    
T  47325145 tactttcactgcaagattctttgagttagggtaagagttgtgagtctgatgagtcgttatgacatctt 47325078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 47339447 - 47339384
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgtt 99  Q
    ||||| |||||| ||| ||||||||||| | ||| ||||| ||||||||||||||| |||||||    
T  47339447 tccaagtactttcactgcaagattctttgagttaaggtaaaagttatgagtttgatgagtcgtt 47339384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 47339941 - 47339874
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    |||||| ||| ||||||||||| | |||||||||||||| ||||| |||| ||||||| ||| |||||    
T  47339941 tactttcactgcaagattctttgagttagggtaagagttgtgagtctgatgagtcgttatgacatctt 47339874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 47324153 - 47324091
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgt 98  Q
    ||||| |||||| ||| ||||||||||| | |||||||||||||| ||||| |||| ||||||    
T  47324153 tccaagtactttcactgcaagattctttgagttagggtaagagttgtgagtctgatgagtcgt 47324091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 47338949 - 47338887
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgt 98  Q
    ||||| |||||| ||| ||||||||||| | |||||||||||||| ||||| |||| ||||||    
T  47338949 tccaagtactttcactgcaagattctttgagttagggtaagagttgtgagtctgatgagtcgt 47338887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 15781021 - 15780944
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    ||||| |||||| ||| ||||||||||||| ||||||||| ||||  ||||||||| |||  || ||| |||||||||    
T  15781021 tccaagtactttcactgcaagattctttcagttagggtaaaagttgcgagtttgattagttattctgacatctttgaa 15780944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 15781218 - 15781169
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgat 91  Q
    |||||||||| ||||||||||||  ||| |||||||||| ||||||||||    
T  15781218 tactttgactccaagattctttcggttaaggtaagagttgtgagtttgat 15781169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 47324485 - 47324412
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| ||||||||||||| |||||||| | |  ||||||||||| |||||||||  |||| || |||||||||    
T  47324485 tccaagtactttgactacatgattcttttagtctgggtaagagttgtgagtttgaagagtcattctgaaatctt 47324412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 47339281 - 47339208
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| ||||||||||||| |||||||| | |  ||||||||||| |||||||||  |||| || |||||||||    
T  47339281 tccaagtactttgactacatgattcttttagtctgggtaagagttgtgagtttgaagagtcattctgaaatctt 47339208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 50; Significance: 9e-20; HSPs: 7)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 5503 - 5430
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| |||| || || ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  5503 tccaagtactctgtctccaagattctttcagttagggtaagagttgtgagtttgatcagtcgttttgaaatctt 5430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 5317 - 5254
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgtt 99  Q
    ||||| |||| ||||| |||||||||||||||||||||||||||| |||||||||||| |||||    
T  5317 tccaaatactctgactccaagattctttcaattagggtaagagttgtgagtttgatcaatcgtt 5254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 5689 - 5612
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    |||||||||||||||| || |||||||||| ||||||| |||||| |||||||||| ||| ||| ||| |||||||||    
T  5689 tccaactactttgactccaggattctttcagttagggtgagagttgtgagtttgataagttgttatgacatctttgaa 5612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 5840 - 5763
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    ||||| ||||||||||  |||||||||||| ||||||||||||||  | ||||||| |||| ||||||||||||||||    
T  5840 tccaaatactttgactctaagattctttcagttagggtaagagttgcgtgtttgattagtcattttgaaatctttgaa 5763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 5133 - 5073
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtc 96  Q
    ||||| |||| ||||| ||||||||||||| |||||||||||||| |||||||||||||||    
T  5133 tccaagtactctgactccaagattctttcagttagggtaagagttgtgagtttgatcagtc 5073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 4947 - 4874
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| |||||||||| || |||||||||  ||||||||| ||||  ||||||| |||||||||||||||||||    
T  4947 tccaagtactttgactccatgattctttcggttagggtaaaagtttggagtttgttcagtcgttttgaaatctt 4874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 6007 - 5939
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaa 104  Q
    ||||| |||||| ||| ||||| ||||| | |||||||||||||| |||||||||||||||||| ||||    
T  6007 tccaagtactttcactgcaagaatctttgagttagggtaagagttgtgagtttgatcagtcgttgtgaa 5939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 49791267 - 49791194
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||| |||||||||||||||||||||||| |||  ||||||||| |||||||||||||||||| ||| |||||    
T  49791267 tccaagtactttgactacaagattctttcagttatagtaagagttgtgagtttgatcagtcgttatgacatctt 49791194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 49791912 - 49791835
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    ||||| |||||| |||  ||||||||||||  ||||||||||||| ||||||||||||||||| |||| |||||||||    
T  49791912 tccaagtactttcactctaagattctttcacgtagggtaagagttttgagtttgatcagtcgtcttgacatctttgaa 49791835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 11763383 - 11763327
Alignment:
Q  43 actttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgtt 99  Q
    ||||||||| |||| |||||||| |||||||||||||| ||||||||||||||||||    
T  11763383 actttgactgcaagtttctttcagttagggtaagagttgtgagtttgatcagtcgtt 11763327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 11763556 - 11763501
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgat 91  Q
    ||||| |||||||||| ||||||||||||| |||||||||||||| ||||||||||    
T  11763556 tccaagtactttgactgcaagattctttcacttagggtaagagttgtgagtttgat 11763501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 11763878 - 11763825
Alignment:
Q  46 ttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgtt 99  Q
    |||||| ||||||||||| | |||||||||||||| ||||||||||||||||||    
T  11763878 ttgactgcaagattctttgagttagggtaagagttgtgagtttgatcagtcgtt 11763825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 51858319 - 51858248
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaaa 114  Q
    |||||| ||| ||||||| ||| | ||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  51858319 tactttcacttcaagatttttt-agttaggataagagttgtgagtttgatcagtcgttttgaaatcttggaaa 51858248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 11763038 - 11762971
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttga 103  Q
    |||||||||||||||| ||||||||||||| |||| |||||| || ||||||| | || |||||||||    
T  11763038 tccaactactttgactccaagattctttcagttagagtaagaattttgagtttcaccactcgttttga 11762971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 11763204 - 11763141
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgtt 99  Q
    ||||| |||||| ||| ||||||||||||| ||||||||||| || | ||||||||||||||||    
T  11763204 tccaagtactttcactgcaagattctttcagttagggtaagaatttttagtttgatcagtcgtt 11763141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 49791095 - 49791028
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    |||||||||| ||||||||||||  ||| |||||||||| |||||||||||||| ||| ||| |||||    
T  49791095 tactttgactgcaagattctttcggttaaggtaagagttgtgagtttgatcagttgttatgacatctt 49791028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 51857955 - 51857885
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaat 106  Q
    ||||| |||||||||| ||||||| ||||| |||||||||||||  |||||||||  ||||||| ||||||    
T  51857955 tccaagtactttgactccaagattatttcagttagggtaagagtcgtgagtttgaagagtcgttctgaaat 51857885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 51858142 - 51858080
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgt 98  Q
    ||||| |||||| ||| |||||||| ||||  ||||||||||||| |||||||||||||||||    
T  51858142 tccaagtactttcactccaagattcgttcagctagggtaagagttgtgagtttgatcagtcgt 51858080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 49791708 - 49791651
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgtt 99  Q
    ||||||||||  | |||||||| | |||||||||||||| ||||||||||||||||||    
T  49791708 tactttgactcgaggattcttttagttagggtaagagttgtgagtttgatcagtcgtt 49791651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 99
Target Start/End: Complemental strand, 11763702 - 11763659
Alignment:
Q  56 gattctttcaattagggtaagagttatgagtttgatcagtcgtt 99  Q
    |||||||||| ||| |||||||||| ||||||||||||||||||    
T  11763702 gattctttcagttaaggtaagagttgtgagtttgatcagtcgtt 11763659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 11234921 - 11234992
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    |||||||||| ||||||| |||||  ||||| ||||||| |||||||||||||| |||||||||||||||||    
T  11234921 tactttgactccaagattatttcagctagggaaagagttgtgagtttgatcagtagttttgaaatctttgaa 11234992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 11235255 - 11235322
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    |||||||||| ||||||||||||| |||||||||| ||| ||||||||||| |||||| ||| |||||    
T  11235255 tactttgactccaagattctttcagttagggtaagcgttgtgagtttgatcggtcgttctgacatctt 11235322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 22256610 - 22256677
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    |||||||||| ||| ||||||| | ||||||||||||||  ||||||||| |||||||||||||||||    
T  22256610 tactttgactccaatattctttaagttagggtaagagttgcgagtttgataagtcgttttgaaatctt 22256677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 11234747 - 11234801
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttga 90  Q
    ||||| ||||||||||||| |||||||||| |||||||||||||| |||||||||    
T  11234747 tccaagtactttgactacatgattctttcagttagggtaagagttgtgagtttga 11234801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 11234581 - 11234652
Alignment:
Q  36 tccaactactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatc 107  Q
    ||||| || |||||||| |||||||||||| || ||||||||||| ||| |||||  ||||||| |||||||    
T  11234581 tccaagtattttgactataagattctttcagttggggtaagagttgtgactttgaagagtcgttctgaaatc 11234652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 11234437 - 11234483
Alignment:
Q  58 ttctttcaattagggtaagagttatgagtttgatcagtcgttttgaa 104  Q
    ||||||||||||||||||||||| | |||||||| ||||||| ||||    
T  11234437 ttctttcaattagggtaagagttgtcagtttgataagtcgttctgaa 11234483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 22256459 - 22256497
Alignment:
Q  75 agagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    |||||| ||||||||||||||||||||||| ||||||||    
T  22256459 agagttgtgagtttgatcagtcgttttgaagtctttgaa 22256497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 82240 - 82307
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    |||| ||||| ||| ||||||| | ||||||||||||||  |||||||||||||||||||||||||||    
T  82240 tactgtgactccaatattctttaagttagggtaagagttgcgagtttgatcagtcgttttgaaatctt 82307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 82089 - 82127
Alignment:
Q  75 agagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    |||||| ||||||||||||||||||||||| ||||||||    
T  82089 agagttgtgagtttgatcagtcgttttgaagtctttgaa 82127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 84051 - 83987
Alignment:
Q  45 tttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    ||||||| ||| ||||||||| |||||  |||| || |||||||||| | |||||||||||||||    
T  84051 tttgactccaatattctttcagttaggtcaagaattttgagtttgattattcgttttgaaatctt 83987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 4978 - 5044
Alignment:
Q  47 tgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    ||||| ||| ||||||| | || ||||||||||| ||||||||||||||||||||||||| ||||||    
T  4978 tgactccaatattctttaagttcgggtaagagttgtgagtttgatcagtcgttttgaaatatttgaa 5044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 5172 - 5210
Alignment:
Q  75 agagttatgagtttgatcagtcgttttgaaatctttgaa 113  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5172 agagttatgagtttgatcagtcgttttgaaatctttgaa 5210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 5323 - 5390
Alignment:
Q  42 tactttgactacaagattctttcaattagggtaagagttatgagtttgatcagtcgttttgaaatctt 109  Q
    |||||||||| ||| ||||||| | | ||||||| ||||  ||||||||||||| |||||||||||||    
T  5323 tactttgactccaatattctttaagtcagggtaaaagttgcgagtttgatcagttgttttgaaatctt 5390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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