View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17434_high_9 (Length: 478)
Name: NF17434_high_9
Description: NF17434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17434_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 27757627 - 27757169
Alignment:
| Q |
1 |
tcaaaatgactaacaaaaatacatgttagttctataatattgacgcctatgatcaaatgtgtttttggtgtctgatgttaacacatgttgttacatttaa |
100 |
Q |
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| T |
27757627 |
tcaaaatgactaacaaaaatacatgttagttctataatattgacgcctatgatcaaatgtgtttttggtgtctgatgttaacacatgttgttacattcaa |
27757528 |
T |
|
| Q |
101 |
ataatttattttctcaattgactactaatgttgatgtatcaatatcaatattgtatctagtgtctatgtcaaatgctttatg--annnnnnnaggatcaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
27757527 |
ataatttattttctcaattgactactaatgttgatgtatcgatatcaatattgtatctagtgtctatgtc-aatgctttatggtttttttttaggatcaa |
27757429 |
T |
|
| Q |
199 |
aatgactagataaaaagatgtttgaagatgtgtttgtaatttcgactaattgaaggataataatgctttcgcctc--acattcatacaaagaaaatgact |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |
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| T |
27757428 |
aatgactagataaaaagatgtttgaagatgtgtttgtaatttcgactaattgaaggacaataatgctttcgcttcatacattcatacaaagaaaatgact |
27757329 |
T |
|
| Q |
297 |
atttaccctttagtcaaatttatgnnnnnnnnnaatgaaagaaaactagctcttttcattaaagagagaagaagaatcactacattgtacggatatcaaa |
396 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27757328 |
atttaccctttagtcaaatttatg--tttttttaatgaaagaaaactagctcttttcattaaagatagaagaagaatcactacattgtacggatatcaaa |
27757231 |
T |
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| Q |
397 |
ataaactcgagaaccactatatatgaccaccttagcaagatgaagaacaaccatgttagcgt |
458 |
Q |
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| T |
27757230 |
ataaactcgagaaccactatatatgaccaccttagcaagatgaagaacaaccatgttagcgt |
27757169 |
T |
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